BtaEX6003012 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr1:121433799-121435262:-
Coord C1 exon
chr1:121435169-121435262
Coord A exon
chr1:121434524-121434650
Coord C2 exon
chr1:121433799-121433879
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTGTGATGGTTTAGGAC
3' ss Score
8.37
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATAGGTCTTCTTTCTAAGGACCCTTTATGCGATCCTGAGGAAAAGATAGAGGCAAGACAGGATGGTAGCTGAGTGTTTGAGGGATTGTTCTCAG
Seq A exon
GACTCAGTGACCTTCACTGATGTGGCTGTGTACTTCAACCAGGAAGAGTGGACTTTACTGAATCCCTTTCAAAGAAAGCTATATAGAAATGTGATGCTGGAAAACTACAAGAACCTGACCACAGCAG
Seq C2 exon
GATATCAAGCAATCAAACCCACTTTAATCTCTTGGTTGGAACAAGACGTATTAAAAACTGTGGAGAGAGGAATCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025146-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTCTTCTTTCTAAGGACCCT
R:
GAGGATTCCTCTCTCCACAGT
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]