MmuEX6064156 @ mm10
Exon Skipping
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20502041-20506065:-
Coord C1 exon
chr9:20505977-20506065
Coord A exon
chr9:20505056-20505178
Coord C2 exon
chr9:20502041-20502121
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACGTGTGTGTAATGGTTTAGGAT
3' ss Score
7.28
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GCCTTCTTTCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGACGGGACGGTGACTGACAACCAGGCAAATTGTTACCAG
Seq A exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAGAATCTATACCGAGAGGTCATGCTGGAGAACTACGAGAACTTGACTTCA
Seq C2 exon
GATGTCAGTTATTCATTCCTAGTCTGACCCCCTGGTTAAAACAAGAAGAGTCCGAGGTGGCGGAAAGTGCTGTTCCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510-'14-16,'14-15,15-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTTTCTAGAGAGCCTATCT
R:
GTTGAGGAACAGCACTTTCCG
Band lengths:
170-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types