HsaEX0074395 @ hg19
Exon Skipping
Gene
ENSG00000224689 | ZNF812
Description
zinc finger protein 812 [Source:HGNC Symbol;Acc:33242]
Coordinates
chr19:9800124-9805543:-
Coord C1 exon
chr19:9805455-9805543
Coord A exon
chr19:9804370-9804496
Coord C2 exon
chr19:9800124-9801945
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTGTGATGACTTAGGAT
3' ss Score
5.4
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGTTTTTTCCCAGGGAACCAATCTGCCCTTTTGAAGAAAAGACAAAGATAGGAACGATGGTGGAGGACTACCTGGCAAATTCTTATCAG
Seq A exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATGCCTCTACAGAGATGTGATGTTGGAGAACTATGTGAACCTGGCCTCTGTGG
Seq C2 exon
CAGACAAGAAGCTACAGTGGATGGAAACTCTGAGAATTGTGGAGAGGTCTTCAGTGAATGGTTTTGCCTTAAAACACACATGAGAGCTCAGAATGGAGGGAACATCTTTGAGGGTAATTGTTATGGAAAAGACATCCTCAGTGTGCACAAGGAAGCCTCTATTGGACAGGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTCACCTTAACTCCAGATCTTGCTGCACATCTTGGAATTCTCAATGCAAGACAACCATACAAATGTAAGGAATGTAGAAAAGGCTTTAAGTATTTTGCAAGCCTTGATAATCACATGGGAATCCACATTGGAGAGAAATTCTGTGAATTTCAGGAATGTAGGAGAGCCATCACTCATTCCTCACACCTAAAGCAGTGTGTAACAGTTCATACTGGAAAGAAATCTAAAAAGACTAAGAAACATGGGAAATCCTTCACTAATTTTTCTCAACTTTCTGCACATGTGAAAATTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224689_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTGCCCTTTTGA
R:
TCCAATAGAGGCTTCCTTGTGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)