RnoEX0101152 @ rn6
Exon Skipping
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21455082-21457931:-
Coord C1 exon
chr8:21457849-21457931
Coord A exon
chr8:21457148-21457256
Coord C2 exon
chr8:21455082-21455167
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGGATGTGGTGACTTTTCAGGAT
3' ss Score
5.26
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGAGTCTGTTCTCTGATGACCAAATCTGCAGTCAAGAAGAAGAGACAGAGGGAGAAAGCACGCTGGGAGAAGACTGTGATAAG
Seq A exon
GATGAGGCTGTGGATTGCGCTCAGGAAGAGTGGACCCTAAAGGATCCGACTCAGAGCAGCAGACCTGGTGATGTGGCAGTGGAGGACCACACAAACTTGGCCACTGCAG
Seq C2 exon
AATTGGAAAAGCAACTACAAACCAAAGATTCAGCACCAGAGCAGGATTTTCTGGCGAGACACACCTTCATGGAGACACAGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.919 C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTGTTCTCTGATGACCA
R:
CCTGCTGTGTCTCCATGAAGG
Band lengths:
167-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]