MmuEX0053126 @ mm9
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20246624-20249429:-
Coord C1 exon
chr9:20249338-20249429
Coord A exon
chr9:20248703-20248811
Coord C2 exon
chr9:20246624-20246709
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGGATTTTGTGACTTTTCAGGAT
3' ss Score
7.62
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AAAGTCTGCTTTCTGGTGACCAGAACTGCAGTCAAGGAGAAGAGACAGAGGGAGAAAGCATGCTGGCTGATTGCCTGAAAAACTGTAATAAG
Seq A exon
GATGAGGCTGTGGATTTCTCTGAAGAGGAGTGGACTACAAAGGCTCCAACTCAGAACAGCAAGCCTGGTGCTGTGGCGGTGGAGGAGCACACAAGCCTGGCCGCTGTAG
Seq C2 exon
AATTGGAAAAGCAACTACAAACCAAAGATTTAGCACCAGAGCAGGATTTTTTGACAAGACACACCTTCATGGAGACACAGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-'6-10,'6-9,9-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.633 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(0.1=0.0)
A:
PF0135222=KRAB=FE(94.7=100)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTCTGCTTTCTGGTGACCA
R:
CACCTGCTGTGTCTCCATGAA
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: