HsaEX0074393 @ hg19
Exon Skipping
Gene
ENSG00000224689 | ZNF812
Description
zinc finger protein 812 [Source:HGNC Symbol;Acc:33242]
Coordinates
chr19:9804370-9811452:-
Coord C1 exon
chr19:9811064-9811452
Coord A exon
chr19:9806770-9806924
Coord C2 exon
chr19:9804370-9804496
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTGATGCTTGATACAAACAGGAC
3' ss Score
4.47
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCAAATACAGAATGTGATGTTCCATTCCAGCCAATGGAAACCGGACGCTGCAGTAGGGTGGACACGTCAGGTTATAAATGACCCTGTTTCCTTTGTTTAGTGTACTCTAGTGGCAAAACTGCTGGCTAGTGTACCTGTTCTGCCAAAAGTAAAATGGGCTTACTGAGGAAATTAAATTTATGTTCAAGTGCTATTTCTTTATGCACCGGGGAACAAGCATTTCTAACAACCTGGTCCTACGTGGCTGAAACTGGATCCCAGAAGCCCCGTCCTTCCCGAAGCTCGTAGCGGAAGTGACATCAGCCCGCCGCCACTATCTTTTCCCGCGCTGGCTGCCCACGGTCAGTGCTGTTTCACCTTTATCTTGGTGGAGTCGACCCCGGCTGTG
Seq A exon
GACTTCAAATAACCCTGTACAAAGAGGAATGGAGATTGCCTCTATTCACCTAGATTCATAAGTTGCCCTGAGGCAATCTTGGCATCAAGGAAGAGAGCATTGAGGCACAACTGACCATCAGCTTCAGAGAATGGCAGTCACTGATTTGTCCCATG
Seq C2 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATGCCTCTACAGAGATGTGATGTTGGAGAACTATGTGAACCTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224689_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGGGAACAAGCATTTCT
R:
TGTCCAGTAAAGCCCACTCCT
Band lengths:
249-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)