RnoEX0101151 @ rn6
Exon Skipping
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21452293-21454330:-
Coord C1 exon
chr8:21454204-21454330
Coord A exon
chr8:21453103-21453186
Coord C2 exon
chr8:21452293-21452375
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTATATGTCTCGGTGCCTAGGAG
3' ss Score
6.31
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAATGGACTTCCCTGGATCCAATTCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
Seq A exon
GAGGTCAGCTATTTAAACCCAGCCTGATCTCTTGGTTGGAGCGGAAAGTAGAGTTGACAGTAATGGAGCAAGGAATTCTCCAAG
Seq C2 exon
AATGGGAAATGCACCTTAAGACAAAAAGGACAGCACTTCAGCAGGATAGATTTTGGTCAGATATGTCAAATGGGATGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTTGAAGATGTGGCTG
R:
CCTGCTGAAGTGCTGTCCTTT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]