GgaEX1004995 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:551572-553207:+
Coord C1 exon
chr2:551572-551698
Coord A exon
chr2:552153-552266
Coord C2 exon
chr2:552953-553207
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCCGTCTCTCAACAGACT
3' ss Score
11.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGCCGGTGACGTTTGACGACGTGTCCGTCTGTTTCAATGACAAGGAATGGGAGAAGCTGGAGGAGTGGCAGAAGGAGCTGTACAAGAATGTGATGAAGGGGAACTACGAGTCGCTCATCTCCTTGG
Seq A exon
ACTATGCAATCTCCAAACCTGGCGTTTTGTCCCAGATCGAGCAGGGGGAGGAACCGCGGGTCAGGAATGAGCAGGACTTGGAGGAGAGTGAGATGATGAGCGATGCCACCGCAG
Seq C2 exon
CCGGGATCAGAGTCGTGATCAAAACGGAGGAGCTGCTTCCAGAGGACAGCCCCGAGAACCCAGAGCTGCACGGGATGTCAGGGCAGTCAGAGGGCAGCTTCCAGAGCCCGGATGAGGAGGCCGCCTGCGAGAGCCCCTACGGCTCCGTGTCCCCTCCCCGAGAGCTGCCGGGCACCAGCCTGGGAGACCCCTCCGAGTACGTCGGGGACTACAACGAGATCCAGAGGGTCATCGTGCACCATGGGAGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028282_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.692 C2=0.663
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGAACTACGAGTCGCTC
R:
GGATCTCGTTGTAGTCCCCGA
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]