MmuEX7003280 @ mm10
Exon Skipping
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47890066-47892974:+
Coord C1 exon
chr6:47890066-47890192
Coord A exon
chr6:47890604-47890723
Coord C2 exon
chr6:47892855-47892974
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCATCTCATTCACAGACA
3' ss Score
9.14
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCCCGGTGACCTTCGTCGACATTGCTGTCTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq A exon
ACACAGATGGCCCAGTGTCCAAGCCAGACCCTCCGGTCCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCCGAAGAGAGAGAAATCCCAGTGACTGCAGACACAG
Seq C2 exon
GAACAGAGACTCTGGTGCCGGCACAGGACATATCCTCCCAGGTAAAGCGAGAAGAAGCCCTGTGTGTTCGGGGCCAGAGGGGCCTGGAAGACAGAGCCATCCCCACAGAATCCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-'3-9,'3-4,7-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=1.000 C2=0.732
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGACCTTCGTCGACATTG
R:
CAGTGATGGATTCTGTGGGGA
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types