HsaEX6011143 @ hg38
Exon Skipping
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr7:149198333-149210704:+
Coord C1 exon
chr7:149198333-149198752
Coord A exon
chr7:149207351-149207470
Coord C2 exon
chr7:149210585-149210704
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCTCCTCACTTCCAGACG
3' ss Score
10.13
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GCTCAAGAATGGGACATGGACGCCCGGCGGCCAATGCCTTTTCAGTTCCCACCCTTTCCAGATAGGGCACCTGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGTTGCCCACAGCAGAGATCTCACTCTGGACTGTGGTGGCTGCCATTCAGGCTGTGGAGAGGAAGGTGGATGCCCAGGCCAGCCAGCTGCTGAACCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGTGAAAAGACGGCCGTGGAATTTGGGAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACTTGCTGCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
ACGCGGAGGGCTCAGTCCCCAAGCCAGATGCTCCAGTCCAGGCTGAGCCCAGGGAAGAACCTTGTGTGTGGGAGCAGCGCCACCCCGAAGAGAGAGAAATCCCAATGGATCCCGAAGCAG
Seq C2 exon
GAGCAGAGCCCCTGGTGCCTGCGCAGGATGCGTCCTCCCAGGTGAAGCGTGAGGACACCCTGTGTGTCCGGGGTCAGCGGGGCCTGGAGGAAAGAGCCATCCCTACGGAATCCATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265_MULTIEX1-3/8=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=1.000 C2=0.951
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=57.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
ENST00000479907fB8098
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACATGGAGAGCAAGTGG
R:
AGGGATGGCTCTTTCCTCCAG
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains