RnoEX6013436 @ rn6
Exon Skipping
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77565961-77567769:+
Coord C1 exon
chr4:77565961-77566087
Coord A exon
chr4:77566643-77566762
Coord C2 exon
chr4:77567650-77567769
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTATCTCATTCACAGACA
3' ss Score
9.6
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCCCAGTGACCTTCGTCGACATTGCTGTTTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq A exon
ACACGGATGGCCCAGTGTCCAAGCCAGATGCTCCAGTGCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCTGAAGAGAGAGAGATCCCAGGGACTGCAGACACAG
Seq C2 exon
GAACAGAGCCTCTGGTGCCTGCACAGGACATGTCCTCCCAGGTGAAGCGAGAAGAAGCCATGTGTGTTCGGAGCCAGCGGAGCCTGGAAGAAAGAGCCATCCCCACAGAATCCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981-'4-8,'4-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=1.000 C2=0.976
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTCGTCGACATTGC
R:
CAGTGATGGATTCTGTGGGGA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]