BtaEX6029340 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000389 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr4:113128472-113131240:+
Coord C1 exon
chr4:113128472-113128598
Coord A exon
chr4:113129563-113129652
Coord C2 exon
chr4:113130429-113131240
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCCTTTCCAACCCAGAGG
3' ss Score
7.72
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTCCAGGTCACTTGAAAATGATGGCGTCTGCTTTTCAGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTATGCCAACGTGATGAAGAGCAACTATGAGACTCTGGTCTCTCTGA
Seq A exon
AGGTGCTTGGCCAGCCTGAAGGAGAAGTGGAGTTGGGTGCAGAGATGCCGGGTGACTTGGAGGAGGAAGAGTCTCGTGGTGTCCACCCAG
Seq C2 exon
TGGAGGAGGTCGTGGTCAAGCAGGAGACCCTGTACACGCAGGACAGCTCCGCGGACCTTCCTGGAGAGTGCTCTGGCTTTGCCAACGAGCAGGCTCTCCTGAGCCCGGAGCAGGCTGAGCTCTGGGATGGGCAGGGCAGTTCCATCCTCTTGGAATCGGGTCCTGCGGACACTCGTCTGCAGGAGCCCACTGACGGTGGGAGAGACCCTGGCAGTGGCAGAACTCTGGGCTGCCCCCCGAAGCGCAAGTGTCACAAGCAGCTGCAGCCGGGTCGGGAGTGTGGACAAGGCCTGCAGCTGAGAAGGGACAGCGCTGGCCCCTGCGGATGTCCCGAGTGTGAGGCCCCACACCCGCAGACCCCCTCGGAGCCAGAGGCGAGCCCCCGGCCCCGGCCCCAGCTTAAGCCGCCAGCCCGGAAGGCGCAGTCGCTCCAGTGCGATGCATGCGCGAGGAGCTTCCGCTGCCGGGTGAGCCTGCTGACCCACCAGCGCTGCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000389-'2-7,'2-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.774 C2=0.626
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=90.7)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF054957=zf-CHY=WD(100=37.6),PF134651=zf-H2C2_2=WD(100=9.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCAGGAGTGGGAGAAC
R:
CAAAGCCAGAGCACTCTCCAG
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]