MmuEX6004165 @ mm10
Exon Skipping
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47927020-47932639:+
Coord C1 exon
chr6:47927020-47927146
Coord A exon
chr6:47929050-47929130
Coord C2 exon
chr6:47930711-47932639
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTTCTAACCCAGAGG
3' ss Score
6.16
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTATCTGGGTCCCTTGAGAATGATGGAGTCTGTTTCTCGGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTGTCTCTGA
Seq A exon
AGGTCCTTGGCCAGCCAGAGGAAGAAGTGGAGTTGGGTGCAGAGATGGTGGGTGACTTGGTGGAAGAAGGTACCCACCTGG
Seq C2 exon
CAGATAGGGCCATGGTCAAACAGGAGATGCTGTACAAGCAGGAAGGCCCTGCAGGTCTTCCCAACATGTTTTCCAGTGCAGTTGAACAGCAGGCTTTCTTTGGCGCGGAGCAGGCTATGTTCTGGAATAGTCCAGGAGATTCTGCCCTCTTGGAATCAGGCCCTGGGGACTCAAACCCTGAGTCTGTTGAGACCAGTAGAGACCCTGCCCCTGGTAGAAATCTGGACTGTCCCCGAAAACAGAAGTCTCACAGACAGGTGCAACTGGGTCAGGAGTGTGGACAGGGTCTGAAGGTGAAGAGGGACTCCAGCCCGTACAAATGTCCCGAGTGCCAGATCAGCTTTCGCTACAAGCAGCAGCTGACTGCACATTTGCAGAGCCACGCGGGCAGGGAGTCTTACTCTGCCACAGAACCAGAGGAGAGCCTTAGACCCAGGCCCCGGCTGAAACCACAGGCCAAAAGGTCGAAGCTGCATCAGTGTGATGTGTGCCACAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763-'7-8,'7-7,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.464 C2=0.498
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=90.7)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF139121=zf-C2H2_6=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTGTTTCTCGGAGCA
R:
CATGTTGGGAAGACCTGCAGG
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types