HsaEX0073183 @ hg19
Exon Skipping
Gene
ENSG00000170260 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:13004]
Coordinates
chr7:148947772-148952700:+
Coord C1 exon
chr7:148947772-148947898
Coord A exon
chr7:148949797-148949886
Coord C2 exon
chr7:148950650-148952700
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTGTTTCCCACCCAGAGG
3' ss Score
8.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTCCAGGTCACTGGAGAATGATGGCGTCTGTTTCACCGAGCAGGAATGGGAGAATCTGGAGGATTGGCAGAAGGAGCTCTACAGAAACGTGATGGAGAGTAACTATGAGACACTGGTCTCTCTGA
Seq A exon
AGGTCCTTGGCCAGACAGAGGGAGAAGCGGAGTTGGGTACAGAGATGCTGGGTGACTTGGAAGAGGAAGGTCCTGGTGGTGCCCACCCAG
Seq C2 exon
CAGGTGGGGTCATGATCAAACAGGAGCTACAGTATACACAGGAAGGCCCTGCGGATCTTCCTGGAGAGTTCTCATGCATTGCTGAAGAGCAGGCTTTCCTGAGCCCAGAGCAGACCGAACTCTGGGGTGGTCAGGGCAGTTCTGTCCTCTTGGAAACAGGTCCTGGGGACTCTACTCTAGAGGAGCCTGTTGGTAGTAGAGTTCCTAGCAGCAGCAGAACTGTGGGCTGCCCGAAGCAGAAATCTCATAGGCAGGTACAGCTGGACCAGGAATGTGGGCAGGGCCTGAAGCTGAAAAAGGACACTTCCCGCCCCTACGAATGTTCTGAGTGTGAGATCACCTTCCGCTATAAGCAGCAGCTGGCCACACATCTGCGCAGCCACTCTGGGTGGGGGTCTTGTACACCTGAGGAGCCAGAGGAGAGCCTTAGGCCCAGGCCACGGCTGAAACCACAGACCAAAAAGGCCAAGCTGCATCAGTGTGATGTGTGCCTGAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170260-'6-9,'6-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.855 C2=0.460
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(94.9=86.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=8.0),PF139121=zf-C2H2_6=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCACCGAGCAGGAATGG
R:
AACTCTCCAGGAAGATCCGCA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)