RnoINT0167911 @ rn6
Intron Retention
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21453103-21454330:-
Coord C1 exon
chr8:21454204-21454330
Coord A exon
chr8:21453187-21454203
Coord C2 exon
chr8:21453103-21453186
Length
1017 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
GTATATGTCTCGGTGCCTAGGAG
3' ss Score
6.31
Exon sequences
Seq C1 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAATGGACTTCCCTGGATCCAATTCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
Seq A exon
GTGAGACTGCCACCACTTGTTCTAGCTTCATAAGAGTACAGAAATACTGCTCTAGAGTATGATGTCAGCTCAGAGAACAGAGGGGAATAGCAGGTGAGGTCCCTTATCATAATTTAATACATTATGGTAGTTCTCAACTAACGGTGGTTAGTAGCATCACTACTGCTATACTAATAATGTTATTCTAAAATTCTTCCTCTTCTTGATTTGTTTTGTTAGGTTGGCTTCAAGCTCTCAGCAATCCTCCTGTCTCAGTTTTCTGAGAGCTGGGATAACAGATGTGGACTGTCGTACTTGACTGTCATTCTTAACCATCTTTTTGAATCTGTTTCTAAAGATAAGAACTAGGGCTATCATCATTCCTCCCTATGAGGATGAAGACCCACGCTGGGCACATTTCTCTGTTGTAGAGTGCTTGTTTAGACACATGAGGCCTTGGGTTTGATCTGTATTCCTGGGGGTGGGGTGACTAAATAATACTGTAATTCATAATTAAATAACACTGTATTAAGTTTTATTGGGAGAAATGGTTTAGTGTATTTTATTTTACATTTTTTAAAGCATAAAATTTTCATTAATAATGAAGGAATAGGAATATTACATGTCATTAATAGTTTATTTATTTATTGACAGTAGTGGGGGTAATTTAGAACCTATAGTCCTGGTAAGTGCTCCACTACTGAACCATACCCTTACCGTTTTTTGGTTTCTCGAGACAGGTCTCACTCTAGTTCTATAGCCGTGACTGTCTTGGAACTCGTTTCCTCTTGCCTCAGCCTTGCGGGTGTTGGGATTACATCTCTGCGTAAACAGTCTTGGTTCTTTCTGGTGGTTTTTAAATGTGTGTTTAATTCTGAATCTGGATTTGATGGATCATAGAAATTTTCTAGTTACCAAATAGCATAAATATTTGTATTCCGAAGTCTTCGTTAATAATTTTAAGTCTTTCTTGAGAAATGTTTTCTATGGCGAGTGTACATGAGCCTTTTCCATTGATGTATATGTCTCGGTGCCTAG
Seq C2 exon
GAGGTCAGCTATTTAAACCCAGCCTGATCTCTTGGTTGGAGCGGAAAGTAGAGTTGACAGTAATGGAGCAAGGAATTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937:ENSRNOT00000038084:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTTGAAGATGTGGCTG
R:
CTTGGAGAATTCCTTGCTCCA
Band lengths:
206-1223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]