BtaEX6037773 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039523 | ZNF266
Description
Bos taurus zinc finger protein 266 (ZNF266), mRNA. [Source:RefSeq mRNA;Acc:NM_001104968]
Coordinates
chr7:15438437-15472604:+
Coord C1 exon
chr7:15438437-15438563
Coord A exon
chr7:15439187-15439267
Coord C2 exon
chr7:15471211-15472604
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGATCTTTCCTCATGAACAGGAT
3' ss Score
7.36
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACTCAGTGACCTTTGCTGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACTTTACTGAACCGCTTTCAGAGAAAGCTGTACAGAGATGTGATGCTGGAGAACTACAAGAACCTGACCACAGCAG
Seq A exon
GATATCAGGTGTTCAAACCCACTCTGATCTCTTGGTTGGAAGAAGAAGAGTTGAGTACTGTGGAGAGAGGAGTCCTCCAAG
Seq C2 exon
GGGATACATATTACCCTGGGGAAGAAAATGGCAACCCACTCCAGCATTCTTGCCTGGAGAGTCCTATGGACAGAGGAGCCTGGAGGACTGTAGTCCATGCGGTCGCAAGAGTCGGACATGACTTAGCGACTAAACCACCACAAGTTTATTGTTTTTTTTAACTGTATCTATACATTTTCATCACATCTTCTCTATTGCCATTTTTTAAAAGAAATCTGGATAGAAATCATAACTATGAGGTGGTAGAGGTTAATCTATTAGAAATCACAATAAAAAACTAGACAGGTTTACAAATAGGTAGAGGAGTACGTCAAGGCTGTATGTCACCCTGCTTATTTAACTTCTATGCAGAGTATATCATGAGAAACGCTGGGCTGGAAGAAGCACAAGCTGGAATCAAGACTGCCGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAATGAAGAGGAACTAAAGAGCCTCTTGATGAAAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039523-'6-9,'6-5,7-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGCTGATGTGGCTGTGA
R:
GGACTCTCCAGGCAAGAATGC
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]