MmuEX0053125 @ mm9
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20243966-20245899:-
Coord C1 exon
chr9:20245773-20245899
Coord A exon
chr9:20244636-20244719
Coord C2 exon
chr9:20243966-20244048
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATATTTGTCTCTGTGTCTAGGAG
3' ss Score
9.89
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAGTGGACCTCACTGGACCCAGTTCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
Seq A exon
GAGGTCAGATGTTTAAACCCAGCCTGATCTCTTGGTTGGAGAAGAAAGTAGAGTTGACAGTAATAGAGCAAGGAATTCTCCAAG
Seq C2 exon
AATGGGAAATGCACCTTAAGACAAAAAGGACAGCACTTCAGCAGGATAGATTTTGGTCAGATATGTCAAATGGGATGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0),PF138701=DUF4201=PU(25.9=93.8),PF0059814=Flu_M1=PU(11.8=56.2)
A:
PF0135222=KRAB=PD(0.1=0.0),PF138701=DUF4201=FE(48.3=100),PF0059814=Flu_M1=FE(36.8=100)
C2:
PF138701=DUF4201=PD(24.1=50.0),PF0059814=Flu_M1=FE(35.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTTGAAGATGTGGCTG
R:
CCTGCTGAAGTGCTGTCCTTT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: