MmuINT0179979 @ mm9
Intron Retention
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20395783-20399637:+
Coord C1 exon
chr9:20395783-20395865
Coord A exon
chr9:20395866-20397604
Coord C2 exon
chr9:20397605-20399637
Length
1739 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
ATTCCTCCCTTTATCAACAGGGC
3' ss Score
10.89
Exon sequences
Seq C1 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCACCATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAATACAAACA
Seq A exon
GTAAGACTGACCAGAGGCGCTTGTTATTTCCCTCACTCACAGAAGACGGTGAATTCCATTGTAGCAAACCACATGGCATACACGCAGGAGGGATAAGCAGTGTATCTGAGAAGTATTTTGAATATAGTAAATTTTGAGGTATCCCAAACCTATCACAAAACCTGTTCTTTAAGAGATCGTTCTGTGCAAGATGTCTCAGTGGGTAAAGACTCTTGATGCAAAGCCTGACAACTTGAGTTTGGTCCACAGAAGCCACACTGTAGAAGGGAGAGCTGACTCTCACAGGGTGTCTCTGACCTCTGCATGCACACTACCGTATGCACTACACTCTCTCCTCTGAAATATATAAATGCAGTCTTATTTGTTTGTTTTATTTATTTGAGACAGGGTCTTACTTGAGTAGCCTTGGCTGGCCTGGTACTCATTATCTAGACAAGAAAGACCTGTAAGTCAGTGAGCTCTGCCTACCTCACTCAGCATAATTATTTTTAAAAAGATATCACAGTTATATAACCCCAAATATGTAACTAAATACTAGCTTTTAAGGCAGTTTTATGTATATATTTTTTAAAAATATTTATTTATTGATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTTCAGAAGAGGACATCAGATTTTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGCACTCTTAACCTCTGAGCCATCTCACCAGCCCCTTATGTATATCTTAATGTTTCTTTTGAGCTTAGATCAAATAGCAACTACTGTCACATCAGTCAGTTTGAAAGAAAACATGCTACAAAAAAGTTAAACATACTTTATCATTCATTCATTTACCAACAGGAGAGAAAAAAATAGTCTTAATAAATTATGAGATTAACCAGGAGATTTTTTATTTGCCACACTCAGGAAAGTTTGAGAATTTTGTAGGAAAATCAACACAAATGATAAATACACAAGAGAAGTAATATCTACCTAATTTAGAGAAATGTCTTAAGAGTCTATGTCAAAACTTGGAGTGATAGAGCCCTCCTGAGTACACATTCCTGCATATGTTTCATGGTTTCTGAGATTCTTAAAATAATGTCATTGAAATACTGCGAAGCCACACTGAAGAAAAATCCTATGAATGTAAGGAGTGTGGGCAAGCCCAGGTATGGTAATGCACGCCTTTAATCCAAACACTTGGGAGGCAGAGGCAGATGGATCTCTGTGACCAGTCTGATCTAGATACCCAGTTCCAGGACAGCCAGAGCTATGTAATTGAGAGGCACCTTCCAATAGATAGGTGATAGATAGATAGATAGATAGATAGATGATAGACAGACAAACAGACAGATAGATAGACAGATAACTGGATAGAAGGCTGAGGCAAGATGTCAGGTATGGTGGCATATGACTTTAATCCCAGCATACAGAGGGCAAAGACAGATGGATTTCTTAACTTTGAAGCCAGCCTTTTCTATGTAGAGCTTCAGACCAGCCATGGCTGCATAGTAAAACCCTGTCTCAAAGACTAACAAAACTACTAGAATACTGAGGGCCCTTTACAAGATTAGAACTCATGATTCTGGACTTTAGGGAAGGAGGGAGTCCTGCTTATAGTCAAAATGGCAAAATCATCTTTTTTTGCACCCTCACATAAGAGGAACCCTTTAATAAATCTGAGAAATTGTCTAACCCTGATTCCTCCCTTTATCAACAG
Seq C2 exon
GGCAGAAGCCACAGTGCACACGAACTCTGCTACTACACACAATGTGGGGAAATTTTCAGTGAGCACTCATATTTCAAGACCCATGTGAAAACTCATAGTGCATGGAACACTGGACATCTCACCCACTCAGATCATGATGTGTCTGCTCAAGTGCACACCATAAAAACGTACCCATGTAAGATTTGTGGGAAAGCCTTTGGACGATCTTCAAATCTCAATAGACACCTGCGAAGCCACACTGGAGAAAAACCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCACTACCTACTCAAGGCTAGTGGAACACTTTAGAACTCACACTGGAGAGAAACCATATAAATGTAAGGATTGTGGAAAAGCCTTTGCTAAGCGGTCAGGCCTTATAACTCATATATCAACCCATGCTTCAGAGAAACCCTTTGCATGTAAAGAGTGTGGAAAAGCCTTTGCTTCATCCCCACGCCTTAGTCAGCATATAAGAATTCACAGTGGAGAGAGACCCTACATATGTAAGGAATGTGGCCGAGCCTTCCTCACGTCCTCATACCTGCGGAACCATGTAGGAAGAACTCACAGTGGAGAGAGACCCTATATATGTGGAGAATGTGGAAAAGCCTTCCATTCTTACTCAAATCTACGTAGACATGTAAGAACTCACAGTGGAGAAAGACCCTACATATGCAAGGAATGTGGAAAGGCCTTCCTCAATTCCTCATACCTACATAACCATATAAGAAAAACACACAGTGGAGAGATGCCTCATATATGTGGTGAATGTGGGAAAGTCTTCCATGCTTCCTCCTACCTGCGTAGACACTTAAGAACTCACAGTGGAGAGAGACCATGCATATGTAAGGAATGTGGGAAAGCCTTCCTTAACTCCTCGTACTTACGTAAGCATCTAACCATTCATACAGGAGACAAACCCTACGAGTGTAAGGAATGTGGGAAAGCCTACCGTAGGTACAATCTGCTACACGACCACTTAAAAACTCATGCAGTTGAAAAGCCGTTTGAATGTGATGTATGTGGAAAATCCTTTCAGTATTTCTCATACCTTAATAAACACATTCGTATTCACACCGGAACAAAACCTTATAAGTGTAAGTACTGTGGGAAAGATTTCACTACTTCCTCAAGCCGAACTGAACATATCCGAACTCACACTGGTGAGAGGCCCTATGAGTGTTCGGAATGTGAGAAAACCTTCACTTCCTCATCTAACCTCATTCACCACGTAAAAATCCACGCTAGAGAGAAACCTTTTGTTGAGAATATAGGGAAGCCTACAGTAGATTTTCCCTACTAGCCAGACACTTGTAACTCACCGTGAGCAGTCACTTCAGATAGGAAGAATACCAGAAACCCTTCACCCCTCATGTCTTGGTTTCGTCAGACTGGGACTTACACTACTAAGAAGTCAAGGAATGTGCAACAGCCCCCAACTGTGACAGTTTACTCTGAAAACATGAAAAGAACTCATACTCAAAATGACCCATGAACTTAAGGAAAGAAACATAATCAGGAAGTGGCCCTCACTACTTCCTAAGACCTTACTAAATATGCGAGACTTCACAATGAGGGGAAATCACTGATGTAAGATGCATTGAAGGTTGTAGTTCTGTTAAGTATTTTAAAATCACTTGTCTCAACAGTTGAGAAAACCTTCATGAAGGTAAGGAATGTTAGAAAGTTAACTATGAACTCAATTTTCAGTGTTTAGTAAGCAGTATAATTCATACCCAAGAGAAATTAACTATATGGAAATTTTGTCCATGTGTGCTGGCAGCAATAAGGCCTGTTGAGTGATATTTATTGTGAACTTTCGCCCTGATTCCTGTCCTGATATATTCCTGGAGTTATAATACATTTTCTTTTCTTCAAGGAACTCCATTTTATGTTGGCTGCTATAACTTCTGGATAGTAAGCTGGTGTTATGAGGACTTTTGAACTATAAACATTGTTTTAGTGTACTGTAGATTCTGTTGTTGGCTTACCAACTATTAAACATTCTACCCTATAGTAGCTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192-Zfp846:NM_172919:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0013017=C1_1=WD(100=11.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.2),PF0062824=PHD=WD(100=10.8),PF134651=zf-H2C2_2=WD(100=5.9),PF0128613=XPA_N=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0128613=XPA_N=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAAGAGTCACCATTGCA
R:
GTGAAGGCTTTCCCACACTCC
Band lengths:
348-2087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: