RnoINT0167913 @ rn6
Intron Retention
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21449176-21452375:-
Coord C1 exon
chr8:21452293-21452375
Coord A exon
chr8:21451450-21452292
Coord C2 exon
chr8:21449176-21451449
Length
843 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTTACCCTTTATCAATAGGGA
3' ss Score
8.83
Exon sequences
Seq C1 exon
AATGGGAAATGCACCTTAAGACAAAAAGGACAGCACTTCAGCAGGATAGATTTTGGTCAGATATGTCAAATGGGATGCAACTG
Seq A exon
GTAAGTCTCATAAATTTACTTTTATATTTATGGGTGCTTTGCCTGCTTTACGTGTTCCATGTTCATTTTTGGTGCCCTTGGAGAACAGACAAGGGCATCTGATTCCTTGGAACAGGAGTTATAGACAGTTACGAGCTGCCCTGTGGGTGCTTGGAAACTAACTTGGGTCCTTTGGAAGAGCAACAAGTGCTTTTAATCCCTGAGCCATCTCTCCAGCCCCAGGATATTTCTTTTTAAAAAATATTTTATTTGAGACTATCGCTTTTAATGTATTTTGATAATAATCAACTCCTATTTCTCTTGACTCCTTCAAGATCCCGCCCCCTAAACTCTACATTCTTTTTTAGAGTCCATTTGAATTTGCGCTAGCCAAATCATTTCTTGGTGTATATAAGGCTATTCACTGAGCATGGTTGACCTACTAGGAGCCATACTCCTAAACTCAAAACTCATATCAGTTGTCCTTAGTTTCTCAGTCAGGGGTGGGGGGAACAATATCCTAATGTCCAAGGTCAGGGAAAATTAGGGATTTACTAATAAAAACAGATTCAAATGAAAGATTTGAGAGAATTAGCTGTAAACAGGCAAGGGAACTCTTTTATCTTTTCCTTTTTTCTTTACTTTTTTTTCTCTTCAGAGTGAGGCACACTACCACTGAAGGTAGCCTTCCCTTGTAGCACTCGCTTCAGCCTCCAGAATGTTGGGATAGTAGTAAGCCAGTATACTCCGCATAAAGTGATGCCCCACGTGTATTGTGAGGTTTAGTGCATCAGAATTCGACATAATAGCTGCCTGTACAAGCCTGAAAAATCCTCTAATCCTCTTTTTACCCTTTATCAATAG
Seq C2 exon
GGAAGAGAACTCAGTGGAGGGGAGCTGGGTGACTCTATTCAAGTTGGAACGGTTTTTAGTGAAGATTCATGCCCTCAGACTTACATTAGTACTCCAAGTACAGAGGACACTTCAGCATGTCATTTACGTGGAAAAGATTTTCTGCCACCCCTTAAAGAAACTTCTACTGAAGAGAACATTCTTCAGTTGAACCAGTGTGTAAAACCTTTGACTTTGACACCAGATGTATCCCAGAGAATGTGCACTCTGGAAAAATCAGTTGAATGCAGTGACTGTGGGAAAACTTTTGTTAATGAGTTAGAACTTCAGGCACATAGTTCTTCTCATAGTGAAAACAATCTCCACAAACCAGAGGAGTGTGGACAAGCTTTTACTCATCCTGTAAGCCATGATGGGCATGTAATTCCCACTGAAAAAAAATACTATGAATGTAAGAAATGTGAAAAGTTTTTTACACATCCTGTGTACCTTAATATCCATGTGCAAAGCCACACTGTGGAGAAACCCTATGACTGTAAGGAATGTGGAAAAGCCTTCACCGAACGCTCAAGCTTAATCGTCCATCTCCGACAACACACGCGAGAGAAGTCTTATGAGTGTAAGGAATGCGGGAAAACCTTTATTCAACCCTCACGCCTTACAGAGCATATGAGAAGTCATACAGGAGAGAAGCCGTATCAGTGTGACCAGTGTGGGAACGCCTTTGCGTCTTCCTCTTACCTTACTACACATTTGAGGACTCATACTGGAGAGAAGCCCTTTGAGTGTAACATATGTGGGAAAGCGTTCACACGCTCTTCTTACCTGCTAGGTCACATACGAACTCACACAGGTGAAAAGCCCTATGAATGTAAAGTATGTGGGAAAGCCTTCAGTGGCCGTTCTTGGCTTACGATACACTTACGGAAACACACTGGCGAGAGACCCTATCCGTGTACAGAATGTGAGAAAGCCTTCACTAGCTTTGCTCAACTAACTGAACATATAAAAACTCACACTGGTGAGAAGCCTTTCCGGTGTAAGGTATGTGCAAGGACCTTTAGAAATTCCTCATGCCTTAAGACTCACTTTCGAATTCACACTGGAATAAAACCATACAAATGTAATTACTGTGGGAAAGACTTCACTGCACGTTCAGGCCTTACTAAGCATGTACTGATTCACAATGGGGAGAAGCCCTATGAGTGTAAGGAATGTGGGAAAGCCTTCAGTACATCTTCTGGCCTTGTTGAACATATAAGAATCCATACAGGAGAGAAGCCCTTTGAATGTTATCAGTGTGGGAAAGCCTTGGCTCATTCCTCATCTCTTGTTGGGCATTTACGAACTCATACTGGAGAGAAACCCTTTGAGTGTAATCAGTGTGACAAAACATTTACACGATCTTCTTATCTTCGCATTCATATGCGAACTCACACCGGAGAGAAACCATATGAATGTAAAGAGTGTGGGAAAACTTTCCCTGAGCGCTCATGCCTTACTAAACACATACGAACACATACTGGAGAAAGGCCCTATGAATGTAAGGAATGTGGGAAAGGCTTCATTAGCTTTGCTCAACTGACAGTACACATAAAAACCCACAGTTCCGAGAGACCTTTTCAGTGTAAGGTATGCACAAAATCCTTTAGAAACTCTTCATCCCTTGAGACCCACTTCCGAATTCACACTGGAGTAAAACCCTATAAATGCAGTTACTGTGGGAAAGACTTCACTGCTCGTTCAGGCCTTACTATACATTTACGAAATCACACTGGGGAGAAGTCCTATGCATGCCAAGAATGTGGAAAAGCCTTTAGCACTTCCTCAGGCCTTATTGCACATATAAGAAGTCACAAAGGAGAGAAACCCTTTGAATGTGACCACTGTGGGAAAGCCTTTGCTTCTTCCTCTTATCTTAACGTGCATTTGAAAATTCACACTGGAGAAAAACCCTTTCAGTGTACAGTATGTGGGAAAACATTTACATGTTCTTCTTACCTTCCTGTTCACATGCGAACTCACACTGGAGAGAAGCCTTTTCAGTGTATAATATGTGGAAAGTCATTTTTGTGGTCCTCCTACCTTCGAGTTCACATGCGAATTCACACTGGAGAGAAACCCTATGTATGCCAGTACTGTGGAAAAGCCTTTACAGAGCACTCAGGCCTTAATAAACATTTACGGAAACACACAGGAGAGAAACCATATGAATACAAGGACAGTGGGGAAGCCTTCACTACTTCCACTGATGCTAATGAACATGAAACTCCCCATTGGGGGGAGAACCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937:ENSRNOT00000038084:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGACAGCACTTCAGCAGG
R:
AGTTTTCCCACAGTCACTGCA
Band lengths:
344-1187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]