HsaINT1047543 @ hg38
Intron Retention
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:HGNC:28684]
Coordinates
chr19:9614021-9617171:-
Coord C1 exon
chr19:9617045-9617171
Coord A exon
chr19:9614104-9617044
Coord C2 exon
chr19:9614021-9614103
Length
2941 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTTTTTCTGCTTAACTTTAGAAT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGACTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
Seq A exon
GTAAGAGTAACATCACTATGCTTGGCATGGTGGCCTGCACCTGTAGTCCCAGATACTTGGGAGGCTGAGGTGGGAGAATCGCTGGAGCCTGGGAGTTTGATACTAGCATGGGCAACATTGTGATACCTTGTCTCTTAAAAAAAAAATTCTAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGACGGATCACAAGGTCCAGAGATGGAGACCATCCTGCCTAACACTGTGAAACCCCGTCTCTACTAAAAAAATTCAAAAAAATTAGGTGGGCATAGTGGCAGGTACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATTGCATGAACCCGGGAGGCGGATCTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGTGACAGATTGAGACTCCATCTCAAAAAAAAAAATCCTAAAAATGAAGACTAGGCCGGTTGTGGTGGCTTACATCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACATGCGGTCAGGAATTTGAGACCAGCCTGGCCAAAATAGTGAATCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACTTGTTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATTGCTTGAACAAGGAGGCAGAAGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCTGCCGGGGCGACACAGTGATACTTCGTCTAAAAAAAAATACATTAAAAATAAAAATAAACACTAGCATCATTTCTTGTAGCCTGTTATAGGGCAGATGTATGTTACATGCTTGCTTGTCAATTCTGAAAACAGTGGGGAATAACAGAGACAGTCCCAAAGTAACAGTCCCTGCTGTAGTATGTTTTAATTTACTGTGGTAATCCTGGAAACTTCATCAACAGCATCAGCTTTGTGCTGTAAGAAATATACATCTTCCTTCCCCTATTCTTTGATGTAGTAAATTGGAAACTCCAGGGTTGGAGCCCAGTCATCTGTGTTTTCAGAATCACTGAAGGTGAATCTAATATACTATCATGTTTGAGATCCAGTGGCAGAGTTGTTTACCCATGACAGCAAGCATCTTTTTGTAGTACTTAACTTTATTTCTGCTTTTTTTTTTTGAGACAGAGTCTCACTCCATCACCCAGGCTAGAGTGTAATGGTGCCACCTCAGCTCACTGCAACTTCAGCTTCCCAAGTTGCTGGTATTAGGCACACCTGCTACCATGCCCAGTTAAATTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGCCCGGTCTTGAACTCCTGACCTCGGGTGATCCACCCACCTCGGCCTCCCAGAGTGCTGGGATTATGGTGTAAGCCACTGCACCCAGCCTACTTACTTTATTTATTTATTATTTTTGTGACAGGGTCTTGCTCTGTCGCCCAGGCTGGAGTGCGGTGGTGCAATCTCTGTTTACTACAACCTCTGCCCTCCCAGGTTCAGGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGCCAAGTGTCACTGTGCCTAGCTAATTTTTGTATTTTTAGTAGAGAAGGAGTTTCACTATGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCAAATGATCCACCCACCTCGACCTCCCAAAGTGTTAGGATTACAGGCATGAGCCACCACACCCAGCCTACTTTATTTCTTACTGAAATAAAAGTTTTAGTGCTTTACAGGTGTGTACATAAGTCTGAATTTGGGTTTAATGGGTCAGAGATAACCAATCTTTTTTGGGCACAGAAATGGAGATCTTAGCTTTTATATCCCTTTTGTAATAATTACATTGCTTGTATTAGAAATATATCTCCTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATTGTCTGAGGCCAGGAGTTTGAGACCAGTGTGTCCTACACTGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGACGTGGTGGCACACGCCTTTAGTCCCAGCTAGTCAAGAGGCTGAGGCAGGAGAATCACTTCAACACAGAAGGCAGAGGTTGCATTGAGCCAACATTGTGCCACTGCGCTCCAGTGTGGGTGACAGAGTGACACTTCATCTCAAAAAAAAAAAAAAAAGATTTTTAAAGATGCACTTTGCCTCAGAAGATTTAAGCTATTTTTCTCAGAGTTTTGGATATCTTTGACTCTTATTTTCCATCTTGTCAAACATTCCTATGATCTAATAAAACTACCTGTTCTGTTTCTTTGTTAACTTTATCATTCTGATACATGCTGTTTATCTAGATCTTTCCTACTTTCCTTTCCCGAAAATCTACTCTTTCTGTTTTCCATCAGCTTTAATTTTCTTTTCTTTTCTGAAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACTTCTGCCTCCCAGGTTCAAGCAATACTGCCTCAGCCTCACAAGTAGCTGGGATTATAGGCATGCGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACTCCCGGCATTTTTAATTTTTACAGAAGTAGTTTGTAATAAACTATCTAAACACATCAGTTATGTAATAAACCCCACATCATTATAGCCAAATTTTTGATGTACCAAAATCCTCAAGGTTCTCTGGCTTTTATTTTATTGCTGTGTTTAATTTGAAAACAAGTAAAAATGACTCATTTTAAATGAATATTTCTTCTCTAAATCCTTACGTTTCTTTTTCTGCTTAACTTTAG
Seq C2 exon
AATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCAGTGGGATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469:ENST00000302851:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains