MmuINT1035522 @ mm10
Intron Retention
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20502041-20505178:-
Coord C1 exon
chr9:20505052-20505178
Coord A exon
chr9:20502122-20505051
Coord C2 exon
chr9:20502041-20502121
Length
2930 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ACGTGTTTCTGTATATGCAGGAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAGAATCTATACCGAGAGGTCATGCTGGAGAACTACGAGAACTTGACTTCAGTAG
Seq A exon
GTAAGGCTGCCAGCATTCCTCCTTACCTTTTATGGAACAGATACATGGTGCATGCTTCTTAATGTGTAAGAGACTGACCATGTTAATTATGAACTTAGTGGAATGACAGGTCAATTTTTAAATAAAACTTGTGTGTGGGGCTGGGGTCAAAGGGCTTACACCTTTAATCCCAGCACTTGAGAGGCAGAAGCAGAGGCAGGTGGACCTCTTGAGTTCACAGCCAGCCTGTCTATATATCTAGGGCTGTATAATAAAGTCAAACTAAAAAATAGCTTTTCTAATTCATGTGTATGTGTGTGTTTTTATACACGCGTTCACGTGCAGAAACTATAGAAGGCACTAGGTGTTTTCTTCTATCACTACCTATTCCTTTGAGGCAGGCTTTCTCCCTGAGCTTAGAGCTCTTGTGTCTTTCAGACAGTAAGCCCCATCAGTCCTCGGCATCTACCGTAGCATTGTAGAACAGGCACATTCGAGGCCATGCTCGCCTTGTTCTGAGGGTTGCTGAGCTCAGGTCCCTGTGATACTGTGATACTGTAGCAAATGCTCTTAGCCAGCAAGCCATCTTCCCAGCTCCAACAAATCAAATTCCTGGCATAATACGTAATGATCTACAGTGGCAAATCTTTTTTATTTTTTCCTTTTCTCTTTCCTCTCTCCCTTTCTTTAAAAAAATTCTTTTTGTTTTTTGAGATTATAATACAACTCCATTTCGCCCTTCCCTTTCCTCTCTCTGTATCTCTCCCTATATCTCCTTCCTCTCATGGACCCTCACTTTCTTTCAAGTTCATGGTCTCATTCCATTCATTGTGTGTTTATGTTCCTAAATATATAAATATAATCTCCATAGTTCACGTAGTTTTCCTTGTATGTATGTTTTTAAGGCTGACCAGTTGGTATTGGATGACCAGTTGGCATGCTCTTCCCCTGTGGAGGTTCCCCCCCCCCCCCCCAGCATACCTTATTTGTCTATAGTTCTCTGTGTAGGGGGAGGCCTCTTGAACTTCTCCTTGCCCACATTAGCATGTCTATTAGTGTCCTCCTTGCCCACATTAGCATGTCTATTAGTGTCCTCCTTGCCCAGCTCCTATTTAAGCTGAGACTTTTATGTAGTTTCTGACATTACAAAGAGATAAAACCTCACAACAAACTCCTTGATCCTCTGACTTTAAAAATCTTTCCACCTGCTTTTCTAAACTGTGAGTTGCACTGTACATGTGCCCATCAGGACCAGGCTCTACAGCTTTGCCGTTTGATCCACTGTGGCTCTCTGTGGTAATTTCTGTCTGTTACAAAGATGAGGGATGAGGACTACACTTATTTGTGGGTGTAAAGATGCATATTTAGAATGTAGATGGATTACACTGGTTTAGTACGGTGTGGATTGTAGGTTCTCCAAGATCTATGGCTTTTGGCACTAGGCATAACTTCCCTTTTGTCAAGTGGCTCTTAAGGCCAGTTAGAGAGCTGTTGGTTATGTGTGTCAGTTCTGTATCCTTACGGTTATTATGCCATGCTGGCTGTTGTGGTTCAGGGACGTCATAGCTCGGCTGGATTCTTGTTTGCTTCCCTGGTACCTGCAAACTTCATGATTTGTTTGTTTGTTTTTTTTTTCTTCACAGCTGAATAGTATTACATAAGTCTTGTGTACCCCACTTTCACTCTGTATTTGTTGATTGGAGCACTTTTAGGGTTGTTTCCAGTCCCCGGCTGTTGTGAACAGAGCAGCAGTGAGCAAGGCTGAGCAGGGGTCTGTGGAGTCAGATTTCAGGTCCTTTAGGCATGTGCCAAGGAGCAGTGGTGCAGCTCAGTCATACGGGGGATTCATTTTAGCTTTCTGAGAGTTCTCTACATTGATTTCCACAGTAGCTGCACCACTTTGCAGTTCTATCAACAGTGATTGAGGGCTCCCTTATCCCTCGTCCCCTTCAGTATTTGTTACTGGTTAATTTGTATCTGTATCATTTTGCATGAGGTAAGATGAAATCTCAAGGTTGTTTGATTGACAATTTCCTCCTCCATGCTAAGGATGCTGAGCATTTAAGGAGATGTTTTCCTGTGCATTTTGTCCTCATTTCCCTTGTCCCTAGTCATTCCAGACCCTCCCCAGTGATGGACATTAAAAACATTTCTCAGCCAGGATTTTCTTTAGAGAACTCTGAATCTTTTGTTTGTTTCTTTTCATTTTTTTCTCCTTGTTTTTTTGTTTGTTTTTTGTTTTTGTTTTGTTTAAATACACTCTATTTACATAGCTCAGGCAAGCCTTGAGCTAAAACTCAAAAATTGCTGCCTGCCTCTGCTTCCCAAGTGTTGGAATTAGATGTGTGTGCCGCCACGTCCTTTCCCCTTTTCTCTCCTGTTTCATTTTTCCTTCCTCTTTGCACTTCTTCTTTGCCCTTTCCCCCTTCACTGTGACCCTATATTTGGAATCAGAATCTTTCGTGTGTAGTCCAGGATGGCCTTAAACTTGGAAGTCTCTGTCCTCATCCTCCCAAGTTACAGGATTTCAAGTTACTTACACCCCTGTGTCCAACATAGTAGATTTGTTTTTGTCAAGAGTGCATGCGTGTTGTACTGGGCTGTGCATCCATTGTTGGGTTTGAAACCCTAGCATGGTGCACATGCTAGGAAAATGTTTTACCCTGGAGGTGTAGCCCTTCAGGAAGTATACATTAACTTCCATTTGGTTTTCAGAGAGTAGAGCAAACCAGTCCTTTCAGGATACAGAAATGTTGTTTTTTCTATGGTACTAGAGATTGTACTGAGAACCTTACATGTTAAGCCACACCCTTCCCTCCCCCATATTTGAATTTTAACTTACTTTGAATGAATTACCTTGCTTTCACTTGAACTGTGATTTCCTTGGCCATAGGAAAGTTTGTCATCTCCTGCTGAGCCTTTTTCACTCATACGTGTTTCTGTATATGCAG
Seq C2 exon
GATGTCAGTTATTCATTCCTAGTCTGACCCCCTGGTTAAAACAAGAAGAGTCCGAGGTGGCGGAAAGTGCTGTTCCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510:ENSMUST00000174462:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types