HsaINT0186644 @ hg19
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9528504-9529307:-
Coord C1 exon
chr19:9529181-9529307
Coord A exon
chr19:9528585-9529180
Coord C2 exon
chr19:9528504-9528584
Length
596 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTATCTTTCTTTGTGCACAGGAT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GATTCAGTGACTTTTGATGATCTGGCTGTGGACTTCACCCCAGAAGAATGGACTTTACTGGACCCAACTCAGAGAAACCTCTACAGAGATGTGATGCTGGAGAACTACAAGAATTTGGCCACAGTAG
Seq A exon
GTAAGACTGGCCTCATCCCTTGTAGCCTACTATGGAACAGATTATGTTATGTACTTACTGTATTGCACATCAGAGATAGCAACTCTGAACACAATGGGAAATAACAGACATAGTCCCTGCCCTAATAGGGTTTCATCTACTTGGTGATTCTCAAAATGTGGTGTCAGATGAAGAGCATCACCAGCACTGTTGGAGATGTATGTTCTCAGTCTCCACCTTTGACATACTCAGTGAGAAACTGCAACAGGGCCCCTGTCATCTGTGTTTTAACAAGCTCTCATGAATCTGATGTGCTATAATGTTGAAGAATGAGATGTATAGTTGTTTCCCATGAGAATGAAGATCTCTTTGTTTCACTTAACTTCCTATTTGGATAAAAGTCTTAGTGCTTTGTAAGTGTGTACATCAGCCTGGATTTGGGCTTCAGGGATCAGAGATCACCAATCTTTTGGGGGCACAGACAGACGATATTTGCATTTTTAGCCCTTTTAAAATAATTTCACTGCTTCCATTGGAACTATATCTCCTGAGTTGTGGAAAGATTTATCATCTCTTGCATGAGCCTCTTCTGGTAATGTATCTTTCTTTGTGCACAG
Seq C2 exon
GATATCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAACAAGAAGAGTCTAGGACAGTGCAGAGAGGTGATTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-ZNF266:NM_006631:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGACTTTTGATGATCTGGCT
R:
CTTGGAAATCACCTCTCTGCACT
Band lengths:
206-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)