HsaINT0186645 @ hg19
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9526330-9528584:-
Coord C1 exon
chr19:9528504-9528584
Coord A exon
chr19:9526419-9528503
Coord C2 exon
chr19:9526330-9526418
Length
2085 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACATTTCTTTTTCTCTTCAGCTT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GATATCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAACAAGAAGAGTCTAGGACAGTGCAGAGAGGTGATTTCCAAG
Seq A exon
GTGAGTGTTCACAAAGGACCGCCCTGGTCAATAAGTTCAGTATGTTTATAAGTATAATGAGGAAACTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCCGTGGCACAGTCTCAGCTCACTGCAACCTCCGCCTCGCAGGTGCAAGCGATTCTCCTGCCTCAGCCTTCTGATCTCCTGCCTCAGCCCCCTGAGTAGCTGGGATTACAGGCTCACGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTTTGACCGTGTTGGTCAGTGTGGTCTCAAACTCCTGATCTCATGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCTTAGCCATAATGAGGAAACTTTTTAAGATGTGCTTCATCTCACAGTGTTGAGGCCATTATTTTTTTTATTTTTATTTTTTTCTGAGACACAGTTTCACTGTCACCCAGGCTGTAGTGCAGTGGTGCGATCTCGGCTTACTGCAACTTCAGCCTCCCGGGTTCAGGTAATTCTCCTGAGTACTCGTCCTCCCGAGTAGCCGGGACTACAGGTGTGTGCCACGCCTGGTTAATTTTTTGTATTATTAGTGGAGAGAGGGTTTCACCACATTGGCCACGCTGGTCCCAAACTCCTGACTTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAGGTAGGCCATTTCTTTCTCAGAAGTTAAGAAATCTTCAACTTCTCATACTTTTACGCTTTGTCTACTCATTCTTTTCTGTGATAGGACCCGTTGGTTTCTTCTTTAAAAGTTCCTGTTTTGGGCCAGGTGTGGTGGCTCACGCCTATAATCTCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACATGAGGTCATGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCGCTACAAAAATACAACTATTAGCTGGGCGTGGTGGCGCACTCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGGGCCGAAGGTTGCAATGAGCCAAGATCGTGCCGCTGAACTCCAGCTGGGGTGAGAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCTGGCACGGTGGCTCACGTCTGTAATCCCAGAACTTTGGGAGGCCGAGGTGGGAGGATCACCTGATGTCAGGAGTTCGAGACCAGCATGGCCAACATGCTGAAACCCTGTCTCTACTAAAAATGCAAAAATTAGCTGGGCTTGGTGGTAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACTTGGGAGGCGGAAGTTGCAGTGAGCCGAGATTGTTCTATTGCACTCCAGCCTGAGTGACAAGAGTGAAAGTCTTTCTCAAAAAAAAAAAAAAACAAAAAACAAAAACAAGCTCCTTGTTTTGATGTGTGCTTTTTGTTCTATTCCTCAACTTTCCTTCCATGGTAATATTCTTTGTGTTCACCATCAGTTTATAATTTTCATAGAATCAGTTTGTAGTAAACTATGTAAAATTTTGACGCTATATCCTTATTATTGCCAAATTTTTGATATACAATCTTCAAATCTGTCTTTGTGTTTGTTTTTTGTTACCGTGTTTAATTTGAAAACAAATACAGGGGCCGGGTGTGGTGGCTAATGCCTGTAATCCCAGCACTTTGAGGGGCTGAGGCGTGTGGATCACGAGGTCAGGAGTTTGAGACTAGCTTGGCCAACATGGTGAAATCTCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTTGTGGCATGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGAGAGGCAGAGGTTGCAGTGAGCTGAGACCACGCCATTGCACTCCAGCCTGGGCAACAGAGTGAGACACCGTCTCAAGAAAAAAAGAAAACAAGTACAAATGATCCCTCTCATTTTCAGCTCCATCTGTCTACCCTGTATGTCTCCAAACCCTTACATTTCTTTTTCTCTTCAG
Seq C2 exon
CTTCAGAATGGAAAGTGCAACTTAAAACCAAAGAGTTAGCCCTTCAGCAGGATGTTTTGGGGGAGCCAACCTCCAGTGGGATTCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-ZNF266:NM_006631:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)