MmuINT0179239 @ mm10
Intron Retention
Gene
ENSMUSG00000059475 | Zfp426
Description
zinc finger protein 426 [Source:MGI Symbol;Acc:MGI:1920248]
Coordinates
chr9:20471699-20473108:-
Coord C1 exon
chr9:20473028-20473108
Coord A exon
chr9:20471782-20473027
Coord C2 exon
chr9:20471699-20471781
Length
1246 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTCTTTCTGTTTTACTTCAGAAT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGTATCAGCTCATCAAACCCAGTTTGATCTCTTGGTTGGAACAAGAAGAGTTTAGTAAAGGTCAGAAGATAGTTTTCCCAG
Seq A exon
GTCAGTATTCATTATATTTAATGAAATTTTAGTGTTTGTAACTGAAATAAACTTAAAGTAAAAGCAAAGTCCTTGTGTTGGACTGGAGAGCTGGCTCAGTAGGTAAAGGCGTTTTCGACCAAGCCTGGCAACCTGCGTGGTGGAGGAGAGAACTAACTCCCAAAGCCCCTTGACCTCTATCTGCATGTTGTGATGCAAGTGTGTGTGTGTGTGTGTGTGTGCACATACACTCAGTAAGTGAATGGATTGATGAATGAAAGGTCCTTGTATATTTGTGCATGATGTGTGTATGATGTGTGTATGTAGGGGCATGCATGTGCTGCTATAGTGTGTGTGTTGGAGTCCCCACCATCTTCTTTGTCTGCTGCTGCACGTGCCAGGCCCGATATCTTCAGGGGCTTCTCTGTCTCAGTATCCCATCTTGTCATAGCTGTCCTGGAATTACAGACACATGCTGTCATGCCCAGCCTTCTGTGAGTTCTGGGGATCTGAACTCAGATCCTCACACTTGTACAATAAGCACTTTACTCATGGAACCATCCCAGCTCCTACAATGACTCTTTCCAAAATAAATTAGTCTCAGAACTCTGAACTAAGAAAGAAAACCTTCAACTGCCAATTCTCTTCTAGTTTACGTCTAGTCAAACCTTTACATTTATTGCTTTGAGAAATGCTCTCCTTTTCCTAAACATTTTCTATAGTATTTACCTGATAATTTCTATTTACCATCAGTTTTGATTTTTATAGAATCAACTTTTTAAAAATATTTTATTTATTTATTTTACGTATGTGAGTTCACTGTTGCTCTCTTCAGACACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAGTCGAACTCAGGACCTCTGGAAGAGCATCCAGTACTCTTAACCACTGAACCATCTCTCCAGCCCCTATAATCAACTTTTGATATGATCTAAGTTTGATTCGTGTCCTCATCTTTGCCTCGCACAGTGACACATTCCTGAAATCCTGATCAGGAAGCGGAGGCAGGATGGTTATGAAGTCAGTGCGGTGTGGGCTATGTAGTGAGTTCAAGGTGAGGTGGTGTAGTCTCAAAAACAGAACAGAAAAAAGAAACCTCATCTCTCCCTTCTTAAATTCAAAATAAAATAAGTAAGCATTATTTTTTAGCTCCAGTTAAAAAATAACTCCTTTTTTCATATCTACATTTGTCTTTCTGTTTTACTTCAG
Seq C2 exon
AATGGAAATTACAGCTCGAAACCAAATGTTCAGCGTTCCAGCAGGAATTTCTGAGGGGTAACATATCCAGTAGAATGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059475:ENSMUST00000115562:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types