BtaINT0165253 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14744446-14745110:+
Coord C1 exon
chr7:14744446-14744541
Coord A exon
chr7:14744542-14745027
Coord C2 exon
chr7:14745028-14745110
Length
486 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
ATTTTCCCAATTTGTTTCAGATT
3' ss Score
9.76
Exon sequences
Seq C1 exon
GGTGCCAGGTGGGCAAACCCAGCCTCATCTCCCACTTGGAGCAAGAAGAGGAGCTGAGGACAGAGGATCGGGAACTTCACCGAGGCCCTTGTCCCG
Seq A exon
GTAAGCACCAGGCAGACAGAAGTGCTGCCGAGAATCTGCCCTTGCCAGCAATGGGGATGAATGGAGTTTCATTGGGAAACCTCACCCAGGTTGAAAATGCGCTTTCTCTTTCACTACACCTCCATCCTCTTAAAAGTCTTTTGGTTTCCGTGTCCCTTCATCTTTAAATTTGAGGTGGCCATGTGGGCTCTTTGTCCCATTCTTTCCTATTCAACATTCCTGGTCATACTCTTAATATCATTATCAATGTCAGTATTTGAAGAGTTAATTCTTAGTGAGTCAACTTAACATTTCTACCCCCTTCATTGCCAAATGTCTCACACGTCCAGATTTCTCAGTCCTTTTTACTTATGTGTGTTCTCCCCTCTCACATTCCCTTCTCTTCTTTATGGTTTGTATCTGCAAAGAAAGCCACCTCTGTTTTTGTCACCGTCATCCCACCATTTTCCTTCACCAGCAGGTTGATATTTTCCCAATTTGTTTCAG
Seq C2 exon
ATTGGGCAATGCCATCTAAAACCAAATGGTCAATTCTTATGGAAGATATTTTTGGGAAGGAAACATCTAATGGTGTGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077:ENSBTAT00000021396:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]