RnoINT0168024 @ rn6
Intron Retention
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19888806-19890764:+
Coord C1 exon
chr8:19888806-19888901
Coord A exon
chr8:19888902-19890681
Coord C2 exon
chr8:19890682-19890764
Length
1780 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCAGTTTTTTCTTTCAGATT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG
Seq A exon
GTGAGTGAGCACCGGTACCAAGGTGTAATTTTGGCTGTTAGTTCCTTTTCAATGATTTGAGAGGGGTTACGCATTGCTGCTTTCCTGTTTCTTTTACAAAATTACCTTGATGTGTATTTTTATCGGTTTAGGAACTCACCACCATCATCCTAGTGTATGTTGTGTCATAACATAACATGTTGCATTTGTATAGTAGGTAGAAAGTAACTTAGGAGAAAAAGAGTTTATTTAGTCACAGTTTCAAGCTAAAGTCCATCATGGCAGGAAGGACCTGGTGACAGGAAGGTGAAGGGACTGATAACTTGGTGTGTGCCTTCCTGATGTAAAGAGAGATATAAAAATGTACTCAGCACATTGCCCTTTATATTTAGTATGTGCCCCCATCTCCACCTAGTCCATGGGATGTTGCAGCCCACATTTAGGCTGGGTTTTCTGGGTCTGGAATGATCTTTGTAGGGGTGAAATGACATGGTTTCAGCCCCTGGAAGAGGTCCCATGGGACATAGGGCTCCACTAGTATTGAGTATCATGTATCAATGGCTTCACTGGGTGTAAGGCTTGTTTGTATAACAATGTACTTATTTTCACATTCATTCAAGGAGTGTCCTCTCTGTTATCCTTAATGACTCCATGATGATCAGAGACAACTGGAGTCCAGGAGACAAAGGTGTGGCTAATGTCTCAGCAATGTGTTAAATTTTGGGTCCTTTAGGACAGCCCTCAAGGCTATGGGAAAGAGTTCTAAATACATGAGGTCGAAAATACCTAATTTCTCAGCTATTCAAAAATTAGAATGCAATATGAATTATATGAGGGGCTTCATGAATCTAAAGGAACAAAGGCAGCTATAGTATGAGCCAGCTTGTCAGAAAGATACAAAGGTTATCCTAGGACAGCAAGGTTAGGCCCAGGTGTGATATACATAGTAATTTCAGGGCAGGGTCCCACCCATCTAGCTTACCATCAGTGCTTAACAAAGGCAAACTGATCTCAAATTCTTTTGCAATGTCTAGGAAAAAAAAGTGTGCTTGCTGTTTTCTAAGAATCAAAGGGCTGGGTTCTTGGGATGCTGATTCGTAAGGTAATCAAAAGGAAAACCTGGAGTAAATGACTGGGTTAATGTATAAAATAAAAGACCGGATCTGTATTCTGTAGGGAATGAGCTATCCAGAGAACTTTTTACTATAGAGAGAACTGACACACACACACACACAAGCAAGCAGAAGGGATGGATGGAAAGATCTCTTAAGATAGCAAGGAAGCAGAATATAAACAGAAATCTCCAGAGAACACAGAAGAGTAGACTGGAAAAGCTGTATCAAGCCGAACACAGGTTGCCAGCATGGATCCACGATTTGACCTCTCACAGACAGCCCTTGTATCAGAACCCTTCAAGCTGAGGCTTGTCCTTAGCACCTCATAGTAGGTCCCACCCCTTCAAAGGTTCTACCACATCAGTGTCACTATGCCATGTACTAACTCATTAACATGTGGATTCTAGAATAAATACCTTCAGAACATTAATATGGAAGTATATCTGATAACAAGAACTAGGAAAGGAAGTGTTCTTTGCCTTTTTATCTATCTATTGTTTTAAAACCTTTTAATCACTAGATTTCATCTCTGTGTTCCTTTAGCTCTAAATTTAATATTTACCATCATTTTATTTATTTGTATGTTCTTCCTTGTATATCATGAGAATTTACAAAAAAATTTACTTTTCATTCCCATCATCTTACTTTCTTTTGAGTGTGTCAAATTTTCCAGTTTTTTCTTTCAG
Seq C2 exon
ATTGGGAAACTACATCTAAGATCAAATGGTCCATTCTTATGGAAGATATTTTTGGGAAGGAAGCATCTGATGGTGTAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684:ENSRNOT00000034254:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]