HsaINT0186831 @ hg19
Intron Retention
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:13507]
Coordinates
chr19:9268656-9269584:+
Coord C1 exon
chr19:9268656-9268751
Coord A exon
chr19:9268752-9269501
Coord C2 exon
chr19:9269502-9269584
Length
750 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTTTTCCAATTTGTTTCAGATT
3' ss Score
10.36
Exon sequences
Seq C1 exon
GGTATCAGGTCGGCAAACCCAGCCTCATCTCACACTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCGCTCACCAGGGCGCTTGTGCAG
Seq A exon
GTGAGCGAGCCCCAGGCAAAGAGCGGTGCTGTGACTCTACCTCTATTCAGTGACTGGGGTGGAGGGAGGTAGGTTAGGGAGTGTCACCCAGGGAAATTGAGAGATGCTCCTTCCCTCTTTTTGCCCATCCATTCTCTGACAAATCTTTTGGTCCACACACTCCTTCATCTTTGACTTTCACATTCCCATTATTGGGCTCTTTGTCCCATTCTTTCATATTTGATGTTTCTGATCATCCGCTTTCTGTCATTATCAACATCATCTGAATTGCCTTAAATTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCCAAGTAGCTGGGACTACAGGCATGATGCCGCCATGCCTACCTAATTTTAGTATTATTAGTAGACATGGGTTTCACCATGTTGTCCAGGCTGGTCTCGAACACCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGCACCAGGCCTGAATTGACTTAAATTTCTACCCCTGGCATTGCCAAATATCTCACATGACCAGATTTTTTAACAATTGCTTTTGCACCACTTTTCCTTACATAGCCTTAGGATCTGCCAAGAAATCCACCTGTCATTGTCACCATCATCCCACCATTTTCCTTTTCCAACAATTAATACTTTTCCAATTTGTTTCAG
Seq C2 exon
ATTGGGAGACTCCATCTAAAACCAAGTGGTCACTTCTTATGGAAGATATTTTTGGGAAGGAAACGCCCAGTGGTGTGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803-ZNF317:NM_020933:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)