MmuINT0178970 @ mm10
Intron Retention
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19643609-19645307:+
Coord C1 exon
chr9:19643609-19643704
Coord A exon
chr9:19643705-19645224
Coord C2 exon
chr9:19645225-19645307
Length
1520 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCAGTTTTTTCTTTCAGATT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTTATCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGATCTGAGAATGGAGGAGAGAGGAATTCAACAGGGTCCTTCTCCAG
Seq A exon
GTGAGTGAGCACTAGGCACAAAAGGGTAATTTTGGCTGCCAGGTCTTTTGCAGTGATTTGAGTAGGGCTATACATTGCTACTTTCCTGTTTCTGTTACAAAATAACTTTGATGTGTATTTAGCTCACATTTGTATCAGTTCAAAGGGATTGGTGCCATTTTTCTGGTGTAGGCTGTGTCATAACATAACAGGTTGCATTTTATACTAGGTAGAAAGTAACTTAAGGGAGAAAGAGTTTATTTAGTTACATTTTCAAGCTAAAGTTCATCATGGCAGGAAAGACCTGGCAACAGGAAGGTAAAGTGACTGATAACTTGGTATGTGTCTTCCTGATGTAGAGAGAGAGATACAAATGCTGTACTCAGCTCACTTGTCCTTCATATTCAGCATATGCCCCCATGTCCACCTACTCCATGGGATGCTGCAGCCTACATTTAGGATGTGTTTCCTGGGTCCAGCATGGCTTTTGTAGGGGTGGAATGACGTTGTTTCCACCCCTGGAACAGGGCTCACAGGACATAGGCCTCCAGAAGTATCAATGTCTGCAGTGGGTGTAAGGCTTCTTTGTATAATAATGTACGTATTTTCACGTTCCTTCAAGAGCTGTCCTCTCTGTTAATGTTTATGACTTCATGATAAGGTTAAGCCCAAGTGTGGTAGAAATAGTAATTTCAGGGCAGGTTCCCACCCAACTAGCTTTAAAAAGTGCTTAACAAAAGCAGACTGATCTCTGAATTCTTTTCAATGTCAAGAAAAATAATGTGTTCTTGCTGTCTCCTAAGAATCAAAGGACTGGGGTCATGGGATGCTGATTTATAAGGTAATAAAAAAGAAAACCTGGAGTAAATGACTGGATAGATAGGTAAAATGAAAGACTGGACCTGTGTTCTGCAGGAGATGAGCTGTCCAGAGAATTTTTTTAGGACAGAGAGAACTGACACACGCACGAGCAAGCAGGGCATGGACGGTAACATCTTTAAAAATAGCAAGCAAGCAGAATATAGACAGAGAAATCTCCAGAGAGAAAACAGACTGGAAAAGCTGTATCAAGTAGAACACAGGTTATCAGCATAGATCCACGATTTGACTTCAAGTCATTCTTTTCGTCTCTCCTAGACATCCCTTCTTTCAGAACCCTTCTTCAAGCTAAGGCTGGACCTTGGCACCTCACAATAAGTCCCACCCCTTTAAAAGTTCAGCCACGTCACTGTCACTGGACCAGTTCTTTAGCCTGTGGATTCTTGAATAAATACATTCAGTACATTAATATGGAAATATATCTGATAGCACTTAGAAATGAAGTGTTCTTTGTCTTACTATCCATCTGTTGTTTCAAAAACCCTTCAATCAGTAGATTTCATCTCTGTTACCTTAGATTTGACATTTACATTATTCATTTGTATGTTCCTTCTGCCTTGCATTTTCTTGTGAATCATGAGAATTTACATAGAAATTTACTTTTCATCCCTATCATCTTACTTTCTTTTGAATGTGTCAGATTTTCCAGTTTTTTCTTTCAG
Seq C2 exon
ATTGGGGAACTACATCTAAAGTCAAATGGTCTATTCTTCTGGAAGATATTTTTGGGAAGGAAGCATCTGATGATGTAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551:ENSMUST00000208694:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types