MmuEX0053213 @ mm10
Exon Skipping
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19643609-19648338:+
Coord C1 exon
chr9:19643609-19643704
Coord A exon
chr9:19645225-19645307
Coord C2 exon
chr9:19646702-19648338
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTCCAGTTTTTTCTTTCAGATT
3' ss Score
10.64
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTTATCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGATCTGAGAATGGAGGAGAGAGGAATTCAACAGGGTCCTTCTCCAG
Seq A exon
ATTGGGGAACTACATCTAAAGTCAAATGGTCTATTCTTCTGGAAGATATTTTTGGGAAGGAAGCATCTGATGATGTAAGATTG
Seq C2 exon
GAAACATCTCATCTTTTGGAGACATCTTCTGAATTCAGCCACTTGTGTGAAGTCTTTGATATTGGCCCTCACCTTGCTCAGCCAGTAGGAAGGCCCACAGGCAAGAGGCCCTATCACCACCACAGCTGTGGAGTCAAGAACAGGATTCACCTGACTCAGCACATGAGCATGAATGATGGGAGAAAATGGCATAAGTGTCACCAGTGCCAGAAAGCCTTCACCACCAGTGCTTCTCTTACAAGGCACCATAGAATTCACACTGGGGAGAAGCCTTACGAGTGCAGCAGCTGTGGAAAAGCCTTCAATGACCCTTCAGCTCTAAGGAGCCACACAAGAACTCACCTGAAAGAAAAGCCCTTTGACTGTAGTCAGTGTAGTAATGCCTTCCGGACGCTCTCTGCTCTGAAGATACACATGCGCGTTCACACTGGTGAAAGACCCTACAAATGTGATGAGTGTGGCAAAGCCTATGGCAGGAGCTGCCATCTCATTGCTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-'20-25,'20-23,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.036 C2=0.114
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTCATCTCACACCTAGA
R:
TTCCTACTGGCTGAGCAAGGT
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types