MmuALTA0020574-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19643609-19645298:+
Coord C1 exon
chr9:19643609-19643704
Coord A exon
NA
Coord C2 exon
chr9:19645225-19645298
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCAGTTTTTTCTTTCAGATT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTTATCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGATCTGAGAATGGAGGAGAGAGGAATTCAACAGGGTCCTTCTCCAG
Seq A exon
NA
Seq C2 exon
ATTGGGGAACTACATCTAAAGTCAAATGGTCTATTCTTCTGGAAGATATTTTTGGGAAGGAAGCATCTGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-20-23,20-22,20-21-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACAGGGTCCTTCTCCAG
R:
TCATCAGATGCTTCCTTCCCA
Band lengths:
94-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types