RnoEX0101239 @ rn6

Exon Skipping

Gene

ENSRNOG00000006684 | Zfp317

Description

zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]

Coordinates

chr8:19888806-19903544:+

Coord C1 exon

chr8:19888806-19888901

Coord A exon

chr8:19890682-19890764

Coord C2 exon

chr8:19902192-19903544

Length

83 bp

Sequences

Splice sites

3' ss Seq

TTTCCAGTTTTTTCTTTCAGATT

3' ss Score

10.64

5' ss Seq

TTGGTAAGA

5' ss Score

8.85

Exon sequences

Seq C1 exon

GTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG

Seq A exon

ATTGGGAAACTACATCTAAGATCAAATGGTCCATTCTTATGGAAGATATTTTTGGGAAGGAAGCATCTGATGGTGTAAGATTG

Seq C2 exon

GAAGCATCTCATCTTTTGGAGAAATCATCTGACTTTACCCATTTATTTGAAGTCCTTAATATTGGTCGTCACCTTGCACAGCCAATAGGAATGCCCACAAGCAAGAGACCCTATCACCACCACACCTGTGGAGCTGCTTTCAAGAACAGGATTCACCTGACTCAGCACATAAGCATGTATGATGGGAGAAAAATGCATGAATGTCACCAGTGCCAGAAAGCCTTCACCACCAGTGCTTCTCTTACAAGGCACTGTAGAATTCACACTGGGGAGAAGCCTTATGAGTGCAGCAGCTGTGGCAAAGCCTTCAATGACCCATCAGCTCTAAGGAGCCACACAAGAACTCACCTCAAAGAAAAGCCCTTTGACTGTAGTCAGTGTGGTAATGCCTTCCGGACCCTCTCTGCTCTGAAGATACACATGCGAGTTCACACTGGTGAAAGACCCTACAAATGTGACGAGTGTGGCAAAGCCTATGGCAGGAGCTGCCACCTCATTGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000006684-'9-20,'9-16,11-20

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.393 A=0.000 C2=0.069

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF0013017=C1_1=WD(100=14.2),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.8)

Main Inclusion Isoform:

ENSRNOP00000033879