RnoEX0101248 @ rn6
Exon Skipping
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19888806-19890764:+
Coord C1 exon
chr8:19888806-19888901
Coord A exon
chr8:19889501-19889568
Coord C2 exon
chr8:19890682-19890764
Length
68 bp
Sequences
Splice sites
3' ss Seq
TATTTTCACATTCATTCAAGGAG
3' ss Score
5.12
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTTTTCAGGTTGGCAAACCCCGCCTCATCTCACACCTAGAGCAAGAAGAGGAGCTGAGAATGGAGGAGAGAGGCATTCAGCAGTGTCCTTCTCCAG
Seq A exon
GAGTGTCCTCTCTGTTATCCTTAATGACTCCATGATGATCAGAGACAACTGGAGTCCAGGAGACAAAG
Seq C2 exon
ATTGGGAAACTACATCTAAGATCAAATGGTCCATTCTTATGGAAGATATTTTTGGGAAGGAAGCATCTGATGGTGTAAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684_MULTIEX2-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000034254fB16914
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACCCCGCCTCATCTC
R:
CAATCTTACACCATCAGATGCTTCC
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]