MmuINT0178971 @ mm10
Intron Retention
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19645225-19649731:+
Coord C1 exon
chr9:19645225-19645307
Coord A exon
chr9:19645308-19646701
Coord C2 exon
chr9:19646702-19649731
Length
1394 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TCTCATCTCTTAACCAACAGGAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
ATTGGGGAACTACATCTAAAGTCAAATGGTCTATTCTTCTGGAAGATATTTTTGGGAAGGAAGCATCTGATGATGTAAGATTG
Seq A exon
GTAAGATTTCCTTAGGCTAAATCTGTTTTCTGCGTTGGAGAAACTCAATGCAGTTGCTAGTCAGCTCACTCAAGGACCAGTCAAGTGACATACACTAGAGGAAACAGGAATTTCACAAGTGCTAAGTTACAGTTTTTCCTTGGTATCTGCATTCCAGTGAGCTGGACTCGGTGGAATGCAGATATCAAATTCTAAGACTACTTAGTTTCTTTATATAAAATGCCACTTTGTATTGTCTGCATAGAACCTGTACATAATCATTATGTTGCCCGTAATACATAGTATAGTATGGTGTATAAAATGTGTAAATAGCTTTATTATTGTATTGTCTAGCTAATAATGATAAAAGATTGCATATGTTTGACATAGATATAGCTATTTTGTCTTTAAATTGTGACTGAGATTGCTGGAATCTTGAAATGGAACCATTGAGACCCACTATATTGTGAATTTGGGCAGGATCCCAGCCCCAGACACTCTCCTTTAGAGTTCAGATAAATAAATATTTCTATAATGCATGATGGGGCTTAATTTAGTTTTAAACAGTGAACAAAACTGCATGCCAAAAACCACTGTAGCACAGTGCACATAGATCCTTAAAGCACAGCAGCCAATATTCTACTTTTACTTTATTTTTAACTAGGCAAAACCTTGTATAACCCAGGCTAGCCTGGTACTCCAAATCTTGTTCTTTGCTTTTGCCTTCTGATTTGATATTGCAAGTGAGTGCCTACAACCACTTCAACACTCCTTTTCTCTTTGGTGAAGCTCAAATGAAACAGGAACAATGATATCCTAGTTTGGGCTGTTATTGCTCTATAAAACACCATGAGCAAAAGTAACTTGAAAGGGAAAGGTTTTATTTGGCTTAGACTTAAACATCCATAGTCTGTCACTGAAGGAAGTCAGGACAGGAACTCAAACAGAGTGAGAACCTGAAGACAGGTACTGATTGGAGAGGCTATGGAGAGCTTCTACTTATTGCCTTCCTCAGTTTGCTTTCTTATAAGACCACCAGCCCAGGGATGGCCCCATCTACAATCGGCTACTCCCTTCCTCCATCAATCACTAATTAAGAAAATATACTACAGGCTTACCTACAGCCCTGTCTGATAGAAGCATTTTGTTAACTGAGTTTCTCTCTAAGATGAATTTAGCTTGTATCACTTCTCAGTTGTCATAAAACTATTCAGCACAGTTATAGTAATGTGTTTCTATTAGTGCTAATTTATTCAGAGGTAAGATTTAAAGAAGCTGGGCTATATATATATTAATGGTAAAGCCCGTTGTTGTATATTTATCAGGCCTTCCTTTCAGCCATCAGCACCAAAACCATAAAATGAAATAAGGGGTGTTATAAATGTGAAAGTTAGCTCTCATCTCTTAACCAACAG
Seq C2 exon
GAAACATCTCATCTTTTGGAGACATCTTCTGAATTCAGCCACTTGTGTGAAGTCTTTGATATTGGCCCTCACCTTGCTCAGCCAGTAGGAAGGCCCACAGGCAAGAGGCCCTATCACCACCACAGCTGTGGAGTCAAGAACAGGATTCACCTGACTCAGCACATGAGCATGAATGATGGGAGAAAATGGCATAAGTGTCACCAGTGCCAGAAAGCCTTCACCACCAGTGCTTCTCTTACAAGGCACCATAGAATTCACACTGGGGAGAAGCCTTACGAGTGCAGCAGCTGTGGAAAAGCCTTCAATGACCCTTCAGCTCTAAGGAGCCACACAAGAACTCACCTGAAAGAAAAGCCCTTTGACTGTAGTCAGTGTAGTAATGCCTTCCGGACGCTCTCTGCTCTGAAGATACACATGCGCGTTCACACTGGTGAAAGACCCTACAAATGTGATGAGTGTGGCAAAGCCTATGGCAGGAGCTGCCATCTCATTGCTCACAAGCGAACACACACTGGAGAAAGGCCCTATGAATGCCAGGACTGTGGAAAAGCCTTCCAGCATCCCTCCCACCTGAAGGAACATGTCCGAAACCATACTGGGGAAAAGCCTTATGAGTGCACACAGTGTGGCAAAGCCTTCCGATGGAAGTCCAACTTCAATTTGCATAAGAAGAACCACATGGTGGAAAAAACCTATGAGTGCAAAGAATGTGGGAAATCCTTCAGTGACCTCCTATCAAGAAGGAAACACATGAGGATTCATATTGTAAAGAAGCCAGTTGAGTGTCATCAATGTGGGAAAACCTTTCGAAACCAGTCCATCCTGAAAACACACATGAACTCTCACACTGGGGAGAGACCTTATGGCTGTGATCTCTGCGGCAAAGCCTTCAGTGCTAGTTCCAACCTCACTGCACACAGGAAGATTCACACTCAGGAGAGACACTATGAATGTACTTCCTGTGGAAAGGTCTTTGGTGATTACCTGTCACGAAGGAGGCACATGAGCATCCATCTTGTCAAGAAGCGGGTGGATTGTAGGCAGTGCGGAAAAGCCTTCAGGAATCAATCCACTCTGAAGACACACATGAGAAGCCACACAGGTGAGAAGCCATATGAGTGTGACCATTGTGGAAAAGCTTTCAGCATAGGATCCAACCTTAATGTACACCGGAGGATCCATACGGGGGAAAAGCCTTATGAGTGTCTTATTTGTGGAAAAGCCTTCAGTGACCATTCGTCCCTTAGGAGTCATGTGAAAACCCACCGGGGGAGAAGCTCTTTACGCCGTCTGTGTGGGAAAGGTTTCAGTGAATACTCAAATGCAGAGGAAGCCTGGCAAACATAAGTCTTCCATGACCTTCCATGTAGAAAACGCAAAAGGTCACATGACACTTCAGAGAAATCAGTTTGTAGAAAGTGTGAGAAGACCTGAGTTGTTATGCAGCAATTGGGATCTCTGTGAAAACCTAGGGACTGGGAAGAGTTTGTATTGAGTAGCAAGAAACTGTCAACATGTATCATGCTCCCAAACACACAAGAACTGAGGCAGAGAGTCTTCACCCTGAGCATTAGTGCTAAAGTCAGCACTACTACGTGAGCACACCAGAGTGAATCTTGCATTAAAAAATGGAGAGCAAACTGGCCAGCTCTTTATTGTTGTTGGCTCACAAGCCAAGATGCTTCTCTCTCTTTTTTTTTTTTTTTTTTTGGATTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGTGCTTTCTTCTTTTTAAAAAGAAAAATCTGGCAGGGGCTGTACATGGCACTCAAATTCTGATATACATGCTGTTTATAAAAATCTTCATTTAAGGTTTGGTCAGTAGCATTGGCTTTCAACCTGGAGCAGTTTTGCTGTCCAGGGCACTTGTCAGTGTCTGGGTAGGTTTTAGTTTTGAGAATGGAGGGAGATGTGTTAGTGATACAGAAAGAGGACATCACAGATGCTATCAAATAGCCTATGATACACAGAAGTCTTCCATATCAAGGAATTATGTGTACTACTATAAAAGTACTGACGTTGAGAATAATCTCATGATTCTCACATGAGGAGAAATTTTTTGCAGCTTTTTAAAAGAAAAACTGCAATGCAGTTCTCTCTGAAATGTATGAAAACGCATACTGATGATAACTATGAAAATGATTTTAGCCACAGTCCCATGGTGTATGAATGTGAGGTTGTATTTACAAGTCTTTTTTGATAACAACTGAGTCTAGCTCTTTAGTTTTCTTGACCTTTTTATTAGGGTTAGGGTTCTCTGAATAACTCTTAGTCCTCATCATAAACAATTGAATGTAGTATTTTTTTTACTATAGCTTTGTAAATTATATCTTTATTTCACTTTAGTAACCTTATCCTGACCAGAGACATGTTTAGAAATGTGTGATGTTCTGTACTAGATTGTGTGGGTATTTTTGAGTACCTGTGTCCTATTCATTGTGGTCAGAGCATGAAGCTTCCTAACAGATCCTTTAGTTGGGTTTGGCTTTCTATCCAAAAAGCCAAAAGAATAACAAGGACCTAGGATTTCCCATATCCATTTAAACTCCTTTTATAGCGGAAGACTCACAGTTTTATCTGAGTATCAAATAGTTCCACTATAAGAAATCTTTTTCAGTTTTTCATGCAACTTGTATTCTCTACATGCCATGACTCTGGCCGTTGACTCATAAATAGAGATAAGTGTGTGGCATTCTGAGAAAAACCTCTTGGAAAAAAATCTGATTTTTGTTTTTTTAATTCATTTTGTGGCCCTGAAGATGAAAACTGCAGTCTAAAGATGACAGAATAGAGACATCACAGTGATACTAGTCTGTATTGTGGCTTTTGAAAGAGTTTACCTTGGAACTCAATTTATTAAATAGACTTTCTCTTCCCTGAGAAAACAATAAAATTGATTACAAGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551:ENSMUST00000208694:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGGAAGCATCTGATGA
R:
GCTGAAGGGTCATTGAAGGCT
Band lengths:
348-1742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types