HsaINT0186829 @ hg38
Intron Retention
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9158826-9163413:+
Coord C1 exon
chr19:9158826-9158908
Coord A exon
chr19:9158909-9160113
Coord C2 exon
chr19:9160114-9163413
Length
1205 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ACTTACGTCTTAACCAACAGGAA
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATTGGGAGACTCCATCTAAAACCAAGTGGTCACTTCTTATGGAAGATATTTTTGGGAAGGAAACGCCCAGTGGTGTGACGATG
Seq A exon
GTAAGATTTCCGTGGGATAATTCTGGATCTTCCTTCCACGTCTGAGGAGACTGGGGCAGCCTAGGTTAGAAAAGCAGTTCAACACCAGGGCAAGCAGCTTCCCTCAGAGGAGACTGTGTTTCAGAGACACTGGGTATTACCAAGATGGAGACAACCCTAAAGCTAACCTCAAGCTACTTTACCTAGAGTGTCTCTGAGTGAAGATTTTTATAGCTGTGTCTCAGATATTGAGTGTTGGGGCTCAATGCAGTTTTTGTTTTATTTTATATTTATGCTGTACACTTACTTATCAATTTAGTTTTGGTGGTGTTTATTTTTTGGGGGGCAGACAGTCTTGCTCTTGTTGCCCAGTGCAGTGGGCAACATCTTGGCTCACTGCAACCTCTGCCTCCCAGGCTCAAGCCATCCTCCCACCTCAGCCTCCTGAGCAGCTGGGACTATAGGCGTGTGCCACCACACTTGGCTGATTTTTCTATTTTTTGCAGAGACAGGATTTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGGAGATCCATCAGCCTCGGTCTCCCAAAGTGCTGGGATTATAGGCTTGAGCCACCATGCCCAGCCTCAATTCAGTGGTTTTTGTTTGTTTGTTTTTGTTGTTGTTTTTGTTTTTTGTTTTTTTTTTTGAGGCACAGTCTTGCTCTTGTCACCCAGGCTGGAGTGCAATGGCACGATCTCAGCTCACTGCAGCCTCCACCTTTCAGGCTCAAGTGATTCTCCTGTCCCACCCTCCCGAGTAGCTGGGATTACAGGTGTGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGCGTTTCACCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGGTCCACCCGCCTTGGCCTTCCAGAGTGCTGGGATGACAGGCGTGAGCCACCTTGCCCAGCCTCAATTCAGTTTTAAGCAGTGAAGAAATGCTATATGCAAAAAGCTTTGAAAAAGTAACACATGTGGAGCCTTGTGGCCTGGCATTCACCTATTGTCCTTGATGGAGCTCAAATGGGGCAGGGACAGCACGTTTGCACGGCAGATGGTTACAGCTCTAGTCATAGTAATGTGCTTCTATCTGTTCATAGCAGTGTATGTGGGGATGACGCTTAGGGTTGCAATGAATATGAGAATTGCCTTTGTCAGCACTTACGTCTTAACCAACAG
Seq C2 exon
GAAAGAGCCGGTCTTGGAGAGAAGTCCACTGAATACGCTCACTTGTTCGAAGTCTTTGGCATGGACCCTCATCTCACTCAGCCAATGGGAAGGCACGCTGGCAAGAGGCCCTATCACCGCCGCGACTATGGGGTAGCGTTCAAGGGCAGGCCGCACCTCACTCAGCACATGAGCATGTACGACGGGAGAAAAATGCATGAATGTCATCAGTGCCAAAAAGCCTTCACCACGAGCGCGTCCCTCACACGGCACAGGAGAATCCACACCGGGGAGAAGCCTTACGAGTGCAGCGACTGCGGGAAAGCCTTCAACGACCCTTCAGCCCTTAGGAGCCACGCAAGAACTCACCTCAAAGAGAAGCCCTTTGACTGCAGTCAGTGTGGAAATGCATTCCGGACCCTCTCGGCCCTGAAAATCCACATGCGAGTTCACACTGGCGAGAGGCCTTACAAGTGTGATCAGTGCGGGAAGGCTTACGGCCGGAGCTGCCACCTCATCGCACACAAGAGAACGCACACCGGAGAGAGGCCCTACGAGTGTCACGACTGTGGGAAAGCTTTCCAGCACCCCTCCCACCTCAAAGAGCACGTGAGGAATCACACGGGGGAGAAGCCCTACGCGTGCACGCAGTGCGGCAAAGCCTTCCGCTGGAAGTCCAACTTTAATTTGCACAAGAAGAACCACATGGTGGAGAAGACCTACGAATGTAAAGAATGCGGGAAATCCTTTGGCGATCTCGTGTCCCGGAGGAAACACATGAGGATTCACATCGTCAAGAAACCCGTGGAATGTCGGCAGTGCGGGAAGACCTTCCGAAACCAGTCCATCCTTAAGACTCACATGAACTCTCACACTGGAGAGAAACCATACGGGTGCGATCTCTGCGGGAAAGCTTTCAGCGCGAGTTCAAACCTCACCGCACACAGGAAGATACACACGCAAGAGAGACGCTACGAATGCGCCGCCTGCGGGAAAGTCTTCGGTGACTATTTATCCCGGCGGAGGCACATGAGCGTTCACCTTGTAAAGAAACGAGTTGAGTGTAGGCAGTGTGGCAAGGCCTTCAGGAACCAGTCAACGCTGAAGACGCACATGCGAAGCCACACGGGGGAGAAACCGTACGAATGCGATCACTGTGGGAAGGCCTTCAGCATAGGCTCCAACCTGAATGTGCACAGGCGGATCCACACCGGGGAGAAGCCCTACGAATGCCTTGTCTGCGGGAAAGCCTTCAGCGACCACTCATCCCTCAGGAGCCACGTGAAAACTCACCGGGGAGAGAAGCTCTTTGTGTCATCCGTGTGGAAAAGGCTCCAGTGAGCGCGCCTGCTTTAGAGACACAGGATGATTCAGACCGGAAACAGACCTCGTGGGTGTAAGAGGAAGCCTCTGTGAGCTCGCACCTTACTGGGTGCAAAAGAATCCACGGAACTTGGGAGAAGTCCAGTTCCTGTAAAAACTGGGAAGACGAGGCGTTCTCATCCCATAGGAGGTTTGTGAGAACTCACGCCGGGGGTGAAAATGTACGTCTGTAGCATGGAGAAGCCTTCAGGGTACATTCAGCTCTTAACAAACACAGGAGGACTTAATGGCAGCTTGGCATTTAATGTCAAAATCCAAGCCGTGGCATTTAATGTCAAAATGACTTCAGACCACTTCTAGCCTTCTGGGCCCATGAGTAATAATGAGCACACTAGGGAGCATCTCTGTAAACACAGTGGCTGGGGAAACCCTTCCTAGTCTCACTTGATTCCTCATGACGGAAATCACACTAAAGAGAGAAATCAGTGAAGTAAGGAACGTGGAAGGTCATGAATGGGCCGCAAACCACGGCCAGCTGCTTGTCTTTGTATGGCTTGCCAGCTAACAATAGTGGTTCCATCTTTAAGGAAGAAGAATGTTTGATGGAGAAAATTTGTGGCCAATGAAGTCTGAAATACTTCCTGTCATCTGCCCCTTTCCAGAAAAACTTGGCCGACCCTTGGTCTACAGCACGGGTTCTCAGTCGGGCGACGATTTGGCTGTCTAGGCGTCATTTGGCAATGTCTAGAGACATTTTTGGTAGTTAGAATGGGGGGAAGATACTCCTGACTTGTAATAAGAAGACATCAGAGATGCTGCTAAGTCGGCTCCAGCACACAGGAGCCCCCCACAACGAAGAGTTAGTGCCCCCAAACGTCACTGTTGCTGAGGTTGAAAATAATCATGCAGTCATTCCTCAATTACTGCCTGCAGCAATTCCTCCATTTTTATGAATCTTGTGAGCACTTACGCTAGGAGAAATTTCTTTTACAAAACTTTTAAAATACAATTAGTGCTGATAATTCCTATGTGGAAATGATTCCAGCCATGGTCCCCTCACTTGAGCATGTGAATATTCTCACGGAGAGAAGCCCCAGCGAGATTTTCCGGTGAATACGGGATTGCACTTACTCTTTCATCACGGAAACAGACCCCCCGAGAGAAGCCCCAACGAGATTTTCCGGTGAATACGGGACTGCACGTACTCTCTCATCATGAAAACAGAGCCCCGTTCATAAATTTTTCATCTTTATTTTTAAGGTTATACTCCTCTAAATAACCCTTAAGCCTCATCAAGAAAGGTTTGTTTATAGTATTTTTACTATAGCTTCATCCTTGATAACGTCCTAATTTCCTTCTGGACAACCTCCTTGACCAATGGCATATTGAGATCTATGTGACATGAGGATATTTCTCAGTACCACTTTGTTACTGGTACCTGATGCACACGGATTGCGACCAGAGCATGATGCCTCCATCAAGTGGTAATATGTTTGCAGCCTGCTGTCCAGCCAAGAGTGACAGATACTTCTAGTGACTTCCCCGGTATCCACTCTCATCTTCTTCCAATATCAAGAGAATCCAGGTTCTGTCAGATTAGTAAGGTGTGCTAATCTAAATTTTAAAAAATCTCTTACAGGTTTTCTTGCAGCTGGTACCATCCATGTCTCACAGCCCTGGCCACTGACAGATCAGCAGATGTCACCACATGGGCTTCTGAGAAAGCTCTTGAATGGGGATCGTTCTTAAACATGAATTCCTCCCTGTATGTTTTGTTCTTTGCTTTACTTTTCACCTTGCAAAGAGATCCAGTACCTAGTATTGGAAGATCCACCTTAACGACCGTGCATATGAAAACCACAGTCTAAGGAAGTGACTGCAGAAAGCTCACAGCGACCCTGGCCTCCCCTGTGGCCTCTTTGAGTGTCTGCAGCAGCCCTGGACTTCCAGACTTCTATCACATGAGAAAAAATAAAACTGATTATTGGTTTAAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803:ENST00000247956:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTGGGAAGGAAACGCCC
R:
AAGGGTCGTTGAAGGCTTTCC
Band lengths:
355-1560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains