BtaINT0165254 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14745028-14747553:+
Coord C1 exon
chr7:14745028-14745110
Coord A exon
chr7:14745111-14745615
Coord C2 exon
chr7:14745616-14747553
Length
505 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TGCTCCCTTTCCATCAACAGGAA
3' ss Score
10.92
Exon sequences
Seq C1 exon
ATTGGGCAATGCCATCTAAAACCAAATGGTCAATTCTTATGGAAGATATTTTTGGGAAGGAAACATCTAATGGTGTGACAGTG
Seq A exon
GTAAGATTTCCTTGGAATAATTCTGACTCTTCCATATTGGGAGAGGACAGGGTCAGCCTGAGTTAGAAAAGCTTCTCAAAACCAGGCAGGTCCCCTACACCCCTCAGCCACCCTGAAGAGCAAACAGTGATAGAGATAGTATTACAGTTTGGGGAAAACCCTGAATTTGGCCCCAGACTTTTCTTAAAGTCCTATTGAGTAATTATTTCTATAACTACATCTCAGATGTTGAGTGTTGGCTTAATTTAGTTTTAAACAGTTAACAAAGTATATATGCAAGAAGCTTTGTGAAAGTTACATTCATGGCATTCATTTATTTCCTTTTTTGATGGAGTCCATACAGGGCAGGAGCAAAACTTCTGCTTTGCAGATTGTGACATCATTAGTAATTACAGTATGCTTCTACTTATATCAGTTTATGTGGGGATAGTCTTAGGAATGTAACAAACATGGGAAATGCCTTAGTCATTTCCTGAATGCCTTAGTGCTCCCTTTCCATCAACAG
Seq C2 exon
GAAAACAGTCAGCTTGGAGAGGAGTCTGCGGAGTACACTAACCTGTTTGACGTCTTCAGCATAGGCGCTCATCTCACTCAGCAGATGGGAAGGCACACTGGCAAGAGACCGTACCACCACCGGGACTGCGGGGTGACTTTCAGGAACAGGTCCCATGTAACCCAACATGTGAGCATTTACAATGGGAGGAAGATGCATGAATGTCATCAGTGCCAGAAAGCCTTCACCACAAGTGCTTCCCTCACACGGCACAGGAGAATACATACTGGGGAGAAGCCCTATGAGTGCAATGCCTGTGGGAAGGCTTTTAATGACCCCTCAGCCCTCAGGAGTCACTCAAGAACTCATCTCACAGAGAAGCCCTTCGACTGCACTCAGTGTGGGAATGCCTTCCGCACCCTCTCCTCCCTGAAGATACACATGAGAGTCCACACTGGGGAGCGGCCGTACAAGTGTGACGAGTGTGGGAAGGCTTATGGCCGGAGCTGCCACCTCATTGCCCACAGGAGAACACACACTGGGGAGAGACCCTACGAGTGTCATGATTGTGGCAAGGCTTTCCAGCACCCCTCCCACCTCAAAGAGCATGTCAGGAATCATACTGGGGAGAAGCCCTATGAGTGCACGCAATGTGGAAAAGCCTTCCGGTGGAAGTCAAACTTTAACTTGCACAAGAAGAACCACACAGTGGAGAAAACCTACGAGTGTAAAGAGTGTGGGAAATCTTTTGGGGACCTCCTGTCCCGGAGGAAACACATGAGAATTCATATTGTAAAGAAGCCTGTTGAGTGCAGACAGTGTGGGAAGGCATTCAGGAACCAGTCCATCCTCAAGACGCACATGAATTCCCATACTGGAGAGAAGCCATATGGGTGTGACCTCTGCGGGAAAGCCTTCAGTGCGAGCTCCAACCTAACTGCGCATAGGAAGATCCACACCCAAGAGAGACGCTATGAGTGTGCTGCCTGCGGGAAGGTCTTTGGAGACTATTTATCCCGGAGGAGGCACATGAGCATTCATCTCGTGAAGAAGCGTGTTGAATGCAGACAGTGTGGGAAAGCCTTCAGAAACCAGTCGACCCTCAAGACACACATGAGAAGTCACACAGGAGAGAAGCCCTACGAGTGCGACCACTGTGGGAAGGCCTTCAGCATCGGTTCGAACCTCAATGTACACAGAAGGATACACACTGGGGAGAAGCCCTATGAGTGCCTGGCCTGCGGGAAAGCCTTCAGTGACCATTCGTCCCTCAGGAGCCACGTGAAAACTCACCGGGGTGAGAAGCTCTTTGTGTCATCGGTGTGGAAAAGACTCCAATGACACATCTTTTTTAAAGAAAAACATGAGAACTCAGATTGGCAGGGAACCTGACAGGTGTCAGAAAGGCAGGAAGCTTTGAGGAACTCATCTCACTGGGTATAAATTGTTAACTTGGGAGAAATCCAGTTTGTATAAAAACTATGGAAAGACTTGGATTTTTCCATGTCACATTGGAACTATGAGAACTCAAGGTGGTTGAGAAAACGTATATCTGAGGTGTGAGGAAGCCGTCAGTGTACATGTAGCTCTCAACAAACAGGAGAACTTGGAGAGGGAACCCCTAACCTGGTATTTAATGTCAGAATGACTTTAGTACCATCTTGTACCTCTGGGCACAAGAACAAGCTCATCCTGGAGGATCTCTGTAAATTCCATGACTGGACAAACCTTTCCTGGTCTGATTGTATCCTTTATGAGAGAAATCACACTAAAGAGGAAAATCTATGAAATAAGGACCATGGGGAAGCCAGTAACAGGTTGGCAAGCTATAGCCAGCTGTCTGTTTTAATGCAGCTGGCAAGTTTAGAATAGTGGTGGTGTTTTTAAAGAAGAAAAATATGTGATGGAGACCACTTTTGGCCCACAAAGCCTAAAATACTCATCTCTCTGGCCCTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077:ENSBTAT00000021396:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGGAAACATCTAATGGTGTGA
R:
TGAGGGCTGAGGGGTCATTAA
Band lengths:
358-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]