GgaINT0005383 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:22692321-22692801:-
Coord C1 exon
chrUn_random:22692748-22692801
Coord A exon
chrUn_random:22692744-22692747
Coord C2 exon
chrUn_random:22692321-22692743
Length
4 bp
Sequences
Splice sites
5' ss Seq
GGTAGAGAG
5' ss Score
-27.83
3' ss Seq
ACGCATCCACACAGGTAGAGAGA
3' ss Score
-21.24
Exon sequences
Seq C1 exon
NAGAGCTTCAGCAGAAGTTCCCACCTCACCTACCACCAACGCATCCACACAGGT
Seq A exon
AGAG
Seq C2 exon
AGACCCTTTCAGTGTCCTGAGTGTGGGAAGGGCTTCAACAGCAGTTCCCATCTCACCTGCCACCAACGTATCCACAAAGGAGAGAAACCCTTTCAGTGCTCTGAGTGTGGGAAGGGCTTCAAAACAAAGTTTGAATTGAAGCTGCACCAGCGCATCCACACAGGGGAGAGACCATACAAGTGCTCTGAGTGTGGGAAGGGCTTCAAAAGCAATTCTAACCTCACCTGCCACCATCGCATCCACACAGGAGAGAGACCCTTTCAGTGTCCTGAGTGTGGGAAGAGCTTCAAACGCAGTTCTGAATTGAAGCAGCACCATCCCATCCACACAGGACAGAGACCCTTTCAGTGTCTGGAGTGTGCAAAGAGCTTTAAACGCAGATCTCATCTCAACACTCACAAGCGCACCCACAGAGCACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022404:ENSGALT00000035984:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(40.0=55.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(52.0=9.2),PF134651=zf-H2C2_2=WD(100=18.4),PF134651=zf-H2C2_2=WD(100=18.4),PF134651=zf-H2C2_2=WD(100=18.4),PF0009621=zf-C2H2=WD(100=16.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCTACCACCAACGCATC
R:
TTGTGGATACGTTGGTGGCAG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]