HsaINT0188155 @ hg38
Intron Retention
Gene
ENSG00000196110 | ZNF699
Description
zinc finger protein 699 [Source:HGNC Symbol;Acc:HGNC:24750]
Coordinates
chr19:9297296-9297990:-
Coord C1 exon
chr19:9297880-9297990
Coord A exon
chr19:9297480-9297879
Coord C2 exon
chr19:9297296-9297479
Length
400 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
TTCACTTTTTTTCGTTTCAGGTT
3' ss Score
12.34
Exon sequences
Seq C1 exon
GGTATCCGCTACACACACCCCATCTGATCTCCCAGTGGGAACAAGAGGAGGACCTGCAGACAGTGAAGAGAGAACTTATCCAGGGCATCTTTATGGGAGAGCACCGGGAAG
Seq A exon
GCAAGAACCCTTGGGAGAAACTGTTTTGGTTGGGGGAAAAAATAAACTTAAAGTAAAAAACAAAAACAAACTTTGTTTTATATGAGGAAGCTCATCTTCCACAGATAGCTCAGATGACTATTTTGACTTTTTATCAGTCCTCTCGCATTTTCCTTGTTCTTGGCAAAGACCTTCCACGTTTCCTCTTTGTAAGTTGGCATTTGGTCATGTGCATTTTATCCAATTTCTGTTTTGTTCTCCTAATACTATATTAGTTATGTTAGTTTCAATCTTCATAAAATTATTTCTTAGTTAATTGCTTACCATTTTGACCCTTGTGCCTATTAATACCAAAGTCCTGAAATAGTCACTCTGCTAAAAGTCCTTGGCTCATGGAAGCTTTCACTTTTTTTCGTTTCAG
Seq C2 exon
GTTTTGAGACTCAACTTAAAACTAATGAATCAGTTGCTTCACAAGATATTTGTGGAGAAAAAATATCCAATGAACAGAAAATAGTAAGATTCAAAAGGAATGATTCCTGGTTCTCCAGTTTACATGAAAACCAGGAGTCCTGTGGTATTGATTATCAGAACAAAAGCCATGAGAGACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196110:ENST00000591998:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCGCTACACACACCCCA
R:
CTCAAATGTCTCTCATGGCTTTTGT
Band lengths:
294-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains