BtaINT0008083 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N2X6]
Coordinates
chr26:42944220-42944899:+
Coord C1 exon
chr26:42944220-42944537
Coord A exon
chr26:42944538-42944807
Coord C2 exon
chr26:42944808-42944899
Length
270 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GTGCAGCCAAAATTTTGAGAAAA
3' ss Score
-17.57
Exon sequences
Seq C1 exon
GAGGCTGGGCCCCCGTGCGGCTGGTGGGCGGCCATGGGAGCTGCGCCGGCCGCGTGGAGGTTTTCTACCAGGGAGCCTGGGGGACAGTGTGTGACAGCCTCTGGGACCTGCCGGAAGCAAACGTTGTCTGCCGGCAGCTGGGCTGCGGTCGGGCCATGGAGGCCCCGGGCAAGGCCCACTTTGGGGAAGGTTCCGGGAAGGTCCTCCTGGACAACATGCAGTGCAGGGGGCATGAAGAGCACCTGGACGAGTGCTCCCACGCTGGCTGGTTTGCCCACAACTGTGGGCACAGGGAGGATGCTGGCGTGGTCTGTTCAG
Seq A exon
GTAACCCCGCTCCCTTCCCGGGCAGAGCCCAGCTGGGCCCTTTGAGAAAGTCCTTTCCTAGGGACAGTGTAAAAAAATCACAATTGAGAGTAAAGCAGGACAGGAACTTCCCTGGCAGTGCAGTGGTTTAAAATGCTCCTTCCAGCGTGGGGAAATTGGGTTCGATCCCAGGTTGGGGAACTAAGATCCCACAGGCCACAGAGCAACTAAGCCTGAGCGCTGCAATTAGAGAGCCTGCAACAAAGAACCAGTGCAGCCAAAATTTTGAGA
Seq C2 exon
AAAGAAAAGAAAGCAGGATGTTTTTCACTGATAGCAGATGTTTTTATCTCTCCCACTTACAGATGCTGAATACTCAGTGGCCTTGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039755:ENSBTAT00000066099:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAAACGTTGTCTGCCG
R:
TGGTAGCAAGGCCACTGAGTA
Band lengths:
296-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]