GgaINT0043101 @ galGal3
Intron Retention
Gene
ENSGALG00000009588 | DMBT1
Description
NA
Coordinates
chr6:32917309-32918632:+
Coord C1 exon
chr6:32917309-32917333
Coord A exon
chr6:32917334-32918608
Coord C2 exon
chr6:32918609-32918632
Length
1275 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GTTTTCTTTCTCATTTACAGCTT
3' ss Score
11.23
Exon sequences
Seq C1 exon
GAAGACGCCGGTGTTGTTTGCTCAG
Seq A exon
GTGTGTTTTACGTATTTATATACAATTTATATGGAAATTTATATGGCCAGTCAGAGCATGAGGGACAACCCTGTCCTGGCCACCACTCTCCTCACCAAGACTGCTTCCCAAAAACAGGCAGAACCTTCACATTTGAAGCAATTTTTTTTTTCACCTATAGCATTGGTTCTGTTTAATACTTGCTTTTTCTTATTATTCAGCATTGCAAATTAGTGATTTCTACTACAAAAAATCTGTAAATAAGTTGAAAAGTTGTACACTCCATAGATATGTCAGTCTAGGTTAGGTCTTTCAATGAAAATGGGATAACAGTCCAAGAGAGCTACCAGGTGGAGCACAGCCATTTACCAACTGCTTCTGTCCATCCACTGGCATGTCCTGCTCCTTCTGGGACCTGGATGTTCCTTCACTGTTGGTTAATGTGTAACCAGAAGGTCAGCAAACAGAGCTATCCCACTGAGAAGTGCCAGAGCAGGTGCAGAGGACAGGTCCGGCCTGGTGTTGGTGACAGCTGGCACAGCTTGTCCCTGTGGACTTTAACACAAAGGTGTCATTGTGTTGGAGGTGGAACAAACAGTGGTCCTCATTGTCACAGTGAGTAACAGCCTGTTTGGACACCCATCACAGAGCTGAAGTCTGTGGCAATCTGCACTCATCCTGTACTAGTTAATAGTAATAATACAGCACAGACTGCACTGAAATGCATGCTAGGAACAGGCCTACAAAAAATCAGTACTCTGAATTTATACATTATGAGAAACCCTTGGCCTTGACGTGGGATTTCATGTGCACTTCAGACAATACCATGGACCTTCAGTTTTTTTCTTCTCAAATCTTCTGAAAGCCAGTAAGGAACCATTAAAAGGGAAACGCTGGCCATTGCTGGTCTCTTCCAGTTTCTCAGAATACTTCTACTTCCTCTGTAGCATTTAGATCAAATCCCTTGTTTTTACTTTGGTTACCTTGGGGTTCTTTCCTAGTGATGACATTATCTCTTTTATAATATTTTTTATCACTGAAAAACTTTGTAAAATCATAATTTGTATTTTCCCCTGCAGTCATTCGCATATATATTTCAGAATGGATCTAGCTTCTGTTGTAGACCTGTGTGACAGTCCCCACACAAAGAGGATTATTCTGTATAGCACTGTTTCAGTGCAAATGTGCACAATCAGCATAATGTGCAATGTGACACTTCATCAGTAGATTCAGCTGCTACTGCAGTGACTGAAAACTCCACCTAAAAATGAGCTATGTTTTCTTTCTCATTTACAG
Seq C2 exon
CTTCCACAGGATCTGAAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]