HsaINT0064753 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:124516210-124516748:+
Coord C1 exon
chr10:124516210-124516539
Coord A exon
chr10:124516540-124516676
Coord C2 exon
chr10:124516677-124516748
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATTTTTCTTTTGATCATCAGGTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTGCCTCCCCAGGAGCCTGGATGGAGGTGAGGCTGCTGAACGGCACAGGAAGGTGCTCAGGCCGTGTGGAAGTTCTCGTCCAGGGCACGTGGGGGACCGTGTGTGATGATCTCTGGGACCTGGCTGAGGCCACTGTCGTGTGCCGCCAGCTGCAGTGTGGCCAGGCTGTGGCAGCCCCCACAGGGGCCCACTTTCGGGCAGGCTCTGGGAAGATCTTACTGGATGACATGCAGTGTGTGGGCAGTGAGAGCCATCTGGGTCAATGCATGCGTGGGGACCAGGCCAGGCACAACTGTGGGCACCTGGAGGATGCCAGTGTCATCTGCACAG
Seq A exon
GTAAGGGGCTGTTTTCTTAACAAGAAGTCACTTCTTTGTTTTCCCTTCGAATAATACTTAATGATTGATTTTACTAAGCATTATATTATAAATGGCACTGTAAATGTTAGCATGTTGATTTTTCTTTTGATCATCAG
Seq C2 exon
GTGCTGGCAATTCACCAGGTCTCGCTCCAACCACAGAGCCTGAAGCTGTCACTTCATCATACACACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
-FLJ46361:NR_003570:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATCTCTGGGACCTGGCT
R:
GGAGCGAGACCTGGTGAATTG
Band lengths:
254-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)