BtaINT0008257 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:47467755-47468629:-
Coord C1 exon
chr18:47468392-47468629
Coord A exon
chr18:47468224-47468391
Coord C2 exon
chr18:47467755-47468223
Length
168 bp
Sequences
Splice sites
5' ss Seq
CAGGAGAGA
5' ss Score
1.04
3' ss Seq
ACATCTGAAAGTTCATACAGGAG
3' ss Score
-0.2
Exon sequences
Seq C1 exon
AAAGTATTGACTATACAGAGGGATTATGCATATAAGGGCATAACAAAAATAATTCGTGTGAGCCAAAACATTCCTTCCCCAAAGAGACCTCATCATCAATGTGACTTATTTGGAAGTGCTTTAAGCTGTAATTTAGATTTATGCAATAATAATAGAAACAGTGGATCAAAGAACATTAATAAGATTACTGAATATGGTAAAATTTCCTCCTATACTAAACAAGAGTGTACTCCAACAG
Seq A exon
GAGAGAAATTACGGGACCATAATCAATGTGGAAAAATTCTCAACTATAAACAAGTACCCTCTCAACATCAGAAAATTCATACTGGGGTGAAATTTTATGAATGTCCTGAATTTGGAAATATCTTCACTCAGAATTCACAACTCAAGGTACATCTGAAAGTTCATACAG
Seq C2 exon
GAGAAAAACTCTATGTATGTATTGACTGTGGGAAGGCTTTTGTACAGAAGCCAGAATTCATCACACATCAGAGAACTCATACTCGAGAGAAGCCCTATAAGTGCAGTGAATGTGGGAAAGCCTTTTTCCAAGTCTCTTCTCTTTTCAGGCATCAGAGAATTCATACTGGAGAAAAACTCTATGAATGCAGTGAATGTGGGAAAGGCTTCTCTTATAACTCAGATCTTAGTATACATCAGAAAATTCATACTGGAGAGAGACACCATGAGTGCAGTGAGTGTGGGAAAGCATTCACGCAGAAGTCCACGCTCAAGATGCATCAGAAAATTCATACAGGTGAGAGATCGTATATATGTATTGAATGTGGACAAGCCTTCATCCAGAAGACCCACTTGATTGCACACCGAAGAATTCACACTGGAGAAAAACCATATAAATGCAGTAATTGTGGAAAGTCCTTCATTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040063:ENSBTAT00000057256:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=15.9),PF134651=zf-H2C2_2=WD(100=16.6),PF134651=zf-H2C2_2=WD(100=16.6),PF134651=zf-H2C2_2=WD(100=16.6),PF134651=zf-H2C2_2=WD(100=16.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAAACATTCCTTCCCCA
R:
TGTGTGATGAATTCTGGCTTCTGT
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development