HsaINT0187762 @ hg19
Intron Retention
Gene
ENSG00000245680 | ZNF585B
Description
zinc finger protein 585B [Source:HGNC Symbol;Acc:30948]
Coordinates
chr19:37672481-37680655:-
Coord C1 exon
chr19:37680563-37680655
Coord A exon
chr19:37678147-37680562
Coord C2 exon
chr19:37672481-37678146
Length
2416 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTGAATGTACTCCAACAGGAG
3' ss Score
6.22
Exon sequences
Seq C1 exon
GGTATCAAGTTCCTAAACCAGAGGTGGTCATGTTGGAGCAAGGAAAGGAACCATGGGCACTGCAGGGTGAGAGGCCACGTCACAGCTGCCCAG
Seq A exon
GTGAGTGAAGTGAGGTGAATGTGACTCAGGTTAGATGGGAGACAGGAGGAAATCTCAGCTGTCTTGAAAAACACTGGAACCTGTGAAGTGCTATTAAGACCACTCTTCAGTAAGGCTCTGAATTTTTTATATTGCTTGATGCCTCTCAGATCACTAAATGCCTTCTACCTGGATGACCTTCCTTGTTGATTATAAGTCATGTGCCAGTCAGCCTCATTAAAGATAAATCTTTATTATATTCCTTTTCTGTAACAGTCTTTTTTTCCCTGCCTTCCATATTGTCCTAGAGTCTCTCGTTTACATCCAGGTATTCCTGGATCTGCTTTCTTTCAAAATTTACTCTGTGTCACACACTCCCACTCGTGCTACACCCCTTTTATTTCTGTCTTTCTCACTGTGAGATGCCTCAGAACTTTATCTCTGGGCCAGATACAGTTGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGTATCTCTTGAGGTCAGGAGTTTGAAACCAGCCTGGACAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTAGTGGTGCATGCCTGTAATCCCAGTTACTTGGGAGGGTGAGGCACAAGAGTCACTTGAACCCGGGAAGTGAAGGTTGCAGTGAGCCAAGATCATGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCAGTCTGAAAAAGAAAAAAAAAAAAAAGAACTTTATTTCCAGTCAGGCTCTCTAACTATTTTTGCTATAGTAATGGCCATGAGATTTCTCTTATCTTCCCAGTCCTTCAGGCCTTTCATCCAGCTAATGACTTGGGAATCATTGTCACTTAATCTTTGGGAATACCTCTCTGCTGTGTTTGACATGGCATGGATTAATCACCCTTTCTCACATTTCCTTCTGATGTTGCTTGAGCGATTCCACACTGTTAGGGTCTCTCTTCCTGGTTGGCTTTGTTTGTTTGTTTGTTTGTTTGAGAGGGAGTCTCACTCTGTCGCCCAGGCTGGAGTATAGTGGCGCAATCTTGGCTCACTGCAACCTCCACTTCCCAGGTTCAAATGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGGGTGGGCCACCACGCCTGGCTAATTTTTGTATTTTTATTTTTATTTATTTATTTTTGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCACGTAGCTGGGATTACAGGCATGAGCCACCACGCCCAGCTAACATTGTATTTTTAGTAGAGTTGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCCAACTCTCGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGTATGAGGCACCATGCCCGGGCTTGTTTGTTTTTGTCATTGCTTTATTTTTATATTTCACCTGATGAGGTTTGAGTTTAATCATTGTCTTTAGTTTAGGACACACTATGACCATGAAAATGTGGGTGAAGATTCTCATTTTATTTTTGTGATAATATCCCCTTTTCTCTCTTTCCCCTCACCCATCTGCCTTCCCACCAGAAGCCACTGTTTTGTATAATGGAAGCATTTTTTAATTCGTGCATGTTGTAAAATTTAAAGTGAATTAGGGGCATGGATCATTAGTTTATATAAATCTTATTATGCTATATATCATGTTTTTTGCCTTTTTCCATGTCTATCCATGGTGTTATCTGTTCATCTAGTTTATTTCTTTTAACTGCTGAATTGTTCCCCAGAATGTTTCATTTAAGTAGTGTCACACCCTTCTCATGAAATTACTCACCCTTACCCTTTTCTCTGTGTTCAAGCTGGATAAGCCATTTTTACCTTCCCCTCTAGCCTCTGCTAGCTGCTCTATAAGCAAAAAGTGACTTATTATCCCTTGAAAAAGTGTTTGGATTTCAAACCTTATTACAGGGAATCTCTGGAAAAAAAAAAGACTTCTTTCCACAATGAAAGGGAAGATGATGATAGAGATGATGTGAGATTGTATTTCATTCTAGAATAACAGTGACAGACTGATAACCAGATAGAATATTATCAGAAAAGAAAATAAGTATCTAAGTGATGTTGCTTTAATCAAGAAAATATTGACTACAAATAGGCATTATGAATATAAGGCTATCAGAAGGATAATTCATGTGAACCCAAACATTTTACATCCCCCTAAAAACCCTATCAGTGTGACTTATTTGGAAATGGCTTGAAGCATAATTTAGATCTACACATTCATGATAGAAACGATGCTTCAAAGAATGTTAAGAAGAGTACTAACTATGGTAAAATGTCTTTCTATACTTACTGTGAATGTACTCCAACAG
Seq C2 exon
GAGAGAAATTATGGGACCATAATCAACATAGAAAAATCATCGGTTATAAACCAGCTTCCTCTCAAGATCAAAAAATTTATTCTGGGGAAAAATCCTATGAGTGTGCTGAATTTGGAAAGAGCTTCACCTGGAAGTCACAGTTCAAGGTACATCTGAAAGTTCCTACAGGAGAAAAACTCTATGTATGTATTGAATGTGGGAGGGCTTTTGTACAGAAGCCAGAATTCATCACACATCAGAAAACCCATATGAGAGAGAAGCCCTATAAGTGCAATGAATGTGGAAAATCCTTTTTTCAAGTATCGTCTCTTTTCAGGCATCACAGAATTCATACCGGAGAAAAACTATATGAATGTAGTGAATGTGGGAAAGGTTTCCCTTATAACTCAGATCTCAGTATACATGAGAAAATTCATACTGGAGAGAGACACCATGAATGCACTGACTGTGGCAAAGCGTTCACACAAAAGTCCACACTCAAGATTCATCAGAAAATCCATACAGGCGAGAGATCCTACATCTGTATTGAATGCGGGCAGGCCTTCATCCAGAAAACACAATTGATTGCACACCGAAGAATTCATAGTGGAGAAAAACCATATGAATGCAATAACTGTGGCAAATCCTTCATTTCCAAGTCACAACTTCAGGTACATCAACGTGTTCACACAAGAGTGAAGCCCTATATATGTACCGAATATGGGAAGGTCTTCAGCAATAATTCCAACCTCATTACACATGAGAAGATTCAAAGTAGAGAGAAATCTTCCATATGTACTGAGTGTGGGAAGGCCTTTACCTACAGGTCAGAGTTGATTATTCATCAGAGAATTCACACTGGAGAGAAACCTTATGAATGCAGTGACTGTGGGAGAGCCTTCACTCAGAAGTCAGCACTCACAGTGCATCAGAGAATTCATACAGGAGAAAAATCGTATATATGCATGAAATGTGGACTGGCCTTCATCCGGAAGGCACACTTGATTACACATCAAATAATTCATACTGGAGAGAAACCTTATAAATGTGGTCACTGTGGGAAATTGTTTACTTCCAAGTCACAACTCCATGTTCATAAACGAATTCACACAGGAGAAAAGCCCTATGTATGCAATAAATGTGGGAAGGCATTCACCAACCGGTCAAATCTCATTACACATCAGAAAACTCATACAGGAGAGAAATCTTATATATGTTCCAAATGTGGAAAGGCCTTCACCCAGAGGTCAGACTTGATTACACATCAGAGAATCCATACTGGGGAGAAGCCTTATGAATGCAATACTTGTGGAAAAGCCTTTACTCAGAAGTCAAATCTTAATATACATCAGAAAATTCACACTGGAGAGAGACAGTATGAATGCCACGAATGTGGGAAAGCCTTCAACCAGAAATCAATACTCATTGTTCATCAGAAAATTCATACAGGAGAGAAACCCTATGTATGCACTGAGTGTGGAAGAGCTTTCATCCGCAAGTCAAACTTTATTACTCATCAAAGAATTCATACTGGAGAGAAGCCTTATGAATGCAGTGACTGTGGGAAGTCCTTTACCTCCAAGTCTCAGCTCCTGGTGCATCAGCCAGTTCACACAGGAGAGAAACCCTATGTGTGTGCCGAGTGTGGGAAAGCCTTTAGTGGCAGGTCAAATCTCAGTAAGCACCAGAAAACTCATACCGGAGAAAAGCCCTACATTTGTTCTGAATGTGGGAAGACCTTTCGACAGAAGTCAGAGTTGATTACACATCACAGAATTCATACTGGAGAGAAACCTTATGAGTGCAGTGACTGTGGGAAGTCTTTCACTAAAAAATCACAGCTCCAAGTGCATCAGCGAATTCACACTGGAGAGAAGCCTTACGTGTGTGCTGAGTGTGGGAAGGCCTTTAGCAACAGGTCCAATTTGAATAAACATCAGACAACACACACTGGAGACAAACCCTACAAGTGTGGCATCTGTGGGAAAGGCTTCGTTCAGAAATCAGTGTTCAGTGTTCATCAGAGCAGCCACGCTTGAGAGAAACAGTGTGAGAAAACCCCCCTGAGGGTTGGGTCTGATTGTACACTGTTGCACGCATGCAGCAGAAAAATATGTATATTATTGTAAATAGAAATGACCACATCAGAATGTCACACATGGCTGTTCTGGAGAGGGCCTCTGAGAAGGCACTGAATGAGGCGAGGGACCCTTCCTACATTGTCACCATCCCCAGTAAACCTTGGGTCATTATTCATACTGACAAGGAACCGAGTCAATTTGGTGAATAGGAAAAGCCTTCTCATGAAAACTACAATAGAATACTGTTACCAAATTCTTCATAAGAAAGATCATATTATGGGAATGATAATCCTGTTTACTGTGGATTAGGTATAGTGCCAACAGTTTGAATGGTAAGACAACATAATATATATGATAGTGATGAATCCTTCTGTGAGTTGTTTGTTCCAGAACACACTGTCTAGTAGAATTGTGGGTATTTTCTTCTTTTGAATCGAACACAGTTGTGCATATCCAATTCCCCATTGAGTATTTCTATCAAGCAAGAGATACTGCAATAAGACAAACTCCCTGTGTATTCAGACACAGACCTCAGAGCGTATGTTGAGTCCCCATTGTCATAGAAAAAGACTTACAGTCCCCTTCATTATCTGCCAGGACTCTCTCTGAGCCCCACAGGTTCTCAGCACATTGTGTTTGACACCCAGCACAGTGTTTTTTCTTTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTGAGACAGAGTCTTGCTCTGTCGGGCAAGCTAGAGTGCAGTGGCGCTATCTTGGCTCACTGCAACCTCCGTCTCCCGGGCTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTGCGTGTGCCACCACGCCCAGCTAATTTTTGTATGTTTAGTAGAAACGGGGGTTTCACCATGCTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTCCTGGGATTACGGACGTGAGCCACTGCGCCCGGCCCAGCACAGTGTTTTGTACACTCCCACCACCCTCAAGAAAGCCTTTGAGGTTAGGATTTTCAGGTCATCTGGGAGAACTTAAATTCTTCCTTCTGCTATTACAATTCTTCTCACTCAGTTGCCTGCCTCTTTTTTTTTTTTAATTTACTTGTGACTGAGTTGAAGCCCAGCATTTTACTTTCCTTAATGATCTGACTTTCATAAGTTGATAAGTCATGAAATCATTATCTTACATTATATGAGATATGAGATAAATCATAAATCATATGAAATTGATAACTCATATGAAAACCAACCCCACCATATGTTCACTGTCTACTTGTGTCCATCTTCGTCCCACGCACCCCACAAGGACCTTCCCCGCCATGTGCCTCAAACATCAGTTCCTGACTCAGGGCCTTTGTATTTGCAGTGCCCGTTGCAAAGAGCACAATTCTTTATTTTATCTGTGGCTTGTCCGTCATGTCTTTTTTTCCATGACACCTCCACACAGGCCTTCCCTGCCTGCCTGGTTTAAAATTCCAGCCCCTTACCCTTCCTCCTTTATTCTTCTCCCTAGCAATTTCCACCATGCTGCCTGGTGTATTTTCCTCATTTCTCTGTGGCTTCTACACTAGAAAATATTTCCCTTTTGTTCACCACTATGAGTCTAGACCCATGACTGCCATACAGCAGGCATTCCATAAATGCACCTGTGGAGAGTTGACCCATGCTTGTTGCGTGACTTCTGTCTGATTTTTTTCTGTGTTGCAGCATAAGAAGCGCTAATAGGGAGAACCAACTTGGCTAAAACACACCAGGCTTTTTCACCTCTAGTCTGTACCTGGGCTGTATCCCTTCTCAACCCTAAAGCTAAAAAGTCATTGTGAACCTTTTGGTCTGATGCTAAAGAAGGGAAAACAGGTACAGGAAATCCCATGTGGATGCTTGCTTCCAGGATTTCCTGCCATGATTCCAGAATCCCACAGCTCCAACATGATTGCAAAAGACTCCCTGCTCATTTTTCCTCAGCATGCACAGCGCTGTCCTGTCTCAGTTGCAACTCGACAGAGCCGCATTTACTCCAGAACCCAATCCACACACCTGCTCATCCTGCCCCGAGAGGAGTGCCTGAAGCCAATAGCAGGGAACTAGAGCAGACTTGGGTGGATCTTCATTGGATATTAGGTATCTTGCCCTAGATAGGCAGCAGTGGCCTTACAGATGCTGACAGATGATCTGATTAGATGCACAGTTGCTGGGTGGCGTCTGGGGCCAGTCTATTGGCAGTTCTGGGAGTGGGAACTATTTGGGCTCTGCAAAGATGGTTTCACCTTTAAGAAGGGCAGTATGGGGAGGTGAAGATGGGGCCCAAAGGATAGAACATAGTCAAAGAAGCAGGGCCACAATGCCCCTTTAATTCCCAAGCCCTAGTTGGGCAGTGCTTGGTGACACATCCCATTACCTCACCTTAGATCAATGTCTACTGAGCCATCATTAGCTCTGCTTCCTCACTTCTTCACAGTATCTGATGGCCCATCACATGCTGCTCAACATCTTAGACCAATGTCTGCTCACCCATTACCTCCCTTCACCTCATCCAGCACTGTATCTGAAGCTTCACTATTCTTCCTTCAGTTTTGGATATTTTGTGATACAACATTATCCCCAACTTAGGACAATGTCAGCTGACTCTCAGGAGGGTGCCTGGAGATCACCTCTTCCTTCCTAACATACCCTAGAACAAGGTCTGGTCCCCTTCATTATTCCCATTTTACCTTACTCCTAAGTGTATCACTCCTCATGAATTCCAGGAAATATGGAGGAAAACACATTTCACTGTACATGACTTTCAATAATTTCTCCTTTATATTTATTGTAACGTGATATTTTAGTGCTGACATATATATGTATATGTATGCCCATTTATATAAAAGACTAGTTTTTAGAGAAATTTTAGGTTCACAGCAAAATGGGGCAGAAGGTACAGAGATTTCCCATATATCCCCTACCCTCACATATACACAGCCTCCCCCATCATCAACATCCCCCTTCAGAGTGGTACATTTGTTACAATTGATGAAACTACATTGACACTATCGGCCAAAGTCCATGGTTTAATTAGGGTTCAGTCTTGATGTGCATTCTGTGGGTTGAGACAAATGAATAATGACATGTATGCATTATTACAGAAGGATAAAGAGCCGTTTCACTGTCCCAATAATCCTCTGTGTTTCGCCTACTCCTCTAAACTCCTGGCTATTTTCTTTTGTCTCCATAATTTTGCCTCTGAACCATAAAGTATGCAGCCTTTTCAGATTGATTTGTTTCACTTAGTAATGTGGATTTAAGTTTCTTCCATGTCTTTTCGTAGCTTGCTAGCTCTTTTTTTTTTTTTTTTCTCATTGAATAATATGCTATTGTCTGGAAGTACCATGACTTATTTATCCATTCACCTACTGAAGGACACCTTAATTGCTTCCAAGTTTTGTTGATTATGAATAAAGATGCTATAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245680-ZNF585B:NM_152279:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF097235=Zn-ribbon_8=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0214814=zf-UBP=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF097235=Zn-ribbon_8=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)