BtaINT0008970 @ bosTau6
Intron Retention
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60865974-60866398:-
Coord C1 exon
chr16:60866164-60866398
Coord A exon
chr16:60866083-60866163
Coord C2 exon
chr16:60865974-60866082
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
3' ss Seq
ACCCTTGTTCCGCTTTGCAGAAC
3' ss Score
10.75
Exon sequences
Seq C1 exon
CGCGGGAGAAGCTGGCCGGTGGCGCGGTCCGGGCTGTTGCCGCCTGCCTGGGTCAGTTCATGTCACACGTCCCCGGGCCTATCGCCCGGCGCCCTCGCGCTCTTCCGGTCACCGGGGCGGGGCAGGCGGCGGCCGGCTCTTACTGCCGCACTCGGACCTCTCCCCTCTGGCGACACTTGCTCTGGGCCATGGCGGCGGCGTGGGGACGGTTCCTGTCTCGGGCATGGCTCTGCAG
Seq A exon
GTGCGACCTGACTCATCCCCAGACCCCTAAGGGCGGCCCCAGTTTCGGCCCCAGTAACCCGACCCTTGTTCCGCTTTGCAG
Seq C2 exon
AACGGCCTGGCAGGGCTGCGGCCGAAACTACCGCGCCGCGCTGTGCGCCGAGTTGAAGCGGCCCCTGGTCATTGAGGAGGTGACCCCTCGCCCTGTCCAGCCGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172:ENSBTAT00000064011:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082407=ADH_N=PU(1.7=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGGACCTCTCCCCTCT
R:
TCACCTCCTCAATGACCAGGG
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development