RnoINT0154751 @ rn6
Intron Retention
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75111778-75112028:+
Coord C1 exon
chr13:75111778-75111835
Coord A exon
chr13:75111836-75111919
Coord C2 exon
chr13:75111920-75112028
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
3' ss Seq
CTCCCTTTTCTTTGTTGCAGGCA
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTCTGGTCATGGCGGCGCGGCTGTGTGCGCGGTGCCTCCCTCCGGCGTGGCTCTGCAG
Seq A exon
GTGCAAGCCCGACTGTTCCCCAAGTTCTCCGGCACAGGCCCCGGGGTACGCCCGAGCAAACCAGCTCCCTTTTCTTTGTTGCAG
Seq C2 exon
GCAAGCCGGGCAGGGTCAAAGCCGGCACTACCGAGCTGCAGTCTGCACCGAGTTGAAGCAGCCCCTGACCATTCAAGAGGTGGCTCCTCGCCCTATCGGGCCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177:ENSRNOT00000006924:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082407=ADH_N=PU(1.8=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]