HsaINT1039802 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr1:178037694-178038007:-
Coord C1 exon
chr1:178037897-178038007
Coord A exon
chr1:178037802-178037896
Coord C2 exon
chr1:178037694-178037801
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
3' ss Seq
TCCCTTGTTTTGTGTTGCAGGAG
3' ss Score
11.28
Exon sequences
Seq C1 exon
GCTGTCCGGCTCTTCCTGCCGCGCTCTGGCCACTCCCCCTCGCCCCTCGCTGGGCTTGGCCTTGGCGGCCGTGCTCTGCAGGCAGTGCCTCCCTCGGGCGTGGGTCTGCAG
Seq A exon
GTGCAACCCCGACTCCTCCCTGAGCCCCGCAAGGCAGTCCCAGGGTGCTCCCGGCGGGGCTGCCCGACTGACCCTTCCCTTGTTTTGTGTTGCAG
Seq C2 exon
GAGAGCCGGACAGGGCAGCGGCCGGCACTACCGCGCTGCGATTTGCGCAGAGCTGAAGAAGCCCCTGACCATTGAAGAGGTGGCCCCCGCCCCGTCGGGCCTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254154:ENST00000464428:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCCACTCCCCCTC
R:
GCCACCTCTTCAATGGTCAGG
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains