GgaINT1000603 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6585942-6586570:+
Coord C1 exon
chr8:6585942-6585976
Coord A exon
chr8:6585977-6586446
Coord C2 exon
chr8:6586447-6586570
Length
470 bp
Sequences
Splice sites
5' ss Seq
GCGGTGCGG
5' ss Score
6.09
3' ss Seq
CCCCTTCACTTGCCTTCCAGGCT
3' ss Score
9.83
Exon sequences
Seq C1 exon
ATGGCGGCAGCGGCGGCGGCGGCGGTGGGGCGGCG
Seq A exon
GTGCGGGGCGGCCGGGGGGAGCGGAACGGGCGCGCGTTCCCATCGCTTTCCCTGCCCTTTCCCATCTGTTTCAGAGTCTCTTTGCCCCCGCACCGCCCCCATTCCCCATAAACTCTCTTGATCGTCTATCCCCCTAGTCCCCACTTCCTCCTTCCCGTTCCCAGTCCGTTCATCTATAACCCCCTATACTCCCTTTCCATTCCCCGTCTTTCCCCTTCCACCCCCATCCACGCCGAATCTCGTACCCCCGCACTCCCACTGTTCCCCATCCCCATTTCCTTATCCCCCCCACTCCATTCCCCATCCCATTCCTCCACCCTCCCAACTCCCAATTCCCCCCTACCCCTCAATCTCCATATCCCCATCACCCCCAGTCTCCATCCCTTTCTGCCCTCCCTGTCCTCCCAGCAGCAGCGAGGGGTTGGCACTCCCCTCTCGTGCTGAGCAGTTCCCCTTCACTTGCCTTCCAG
Seq C2 exon
GCTCTGCATCCTGAGGCTGCCTGCCCAGCCTCGTGCCCGGGGGTACCGAGCAGCACTCTGCACGCAGCTGACACAGCCCCTGCTGGTGCAGGACCTCCCGGCCCCTCGGCTGCAGCCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341:ENSGALT00000006927:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082407=ADH_N=PU(1.8=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]