RnoEX0092921 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75105615-75112028:+
Coord C1 exon
chr13:75105615-75105644
Coord A exon
chr13:75111579-75111835
Coord C2 exon
chr13:75111920-75112028
Length
257 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTTTTGCTTTCTAGAAC
3' ss Score
9.64
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
CCGAGCACAGAGACTGGAGAACTAATGGAG
Seq A exon
AACCAAAGAAGGGCTCAAGGATTGTATATCCCGTGATCTAGCCCTAGAAGCAGGGTGGGGCTGACAGTCCCCAGCACAGACAGACTGAGCTCCGCCTGCCTGTCGGGTTAAGGGTTCAGAGCTGGAGCGTCCTCGGACGCCTTTCCGCTCTCCCCTGGGCTCTTCCTGCCACCCGCTGGCCACGCCCTTCGCCGACATCCTCTGGTCATGGCGGCGCGGCTGTGTGCGCGGTGCCTCCCTCCGGCGTGGCTCTGCAG
Seq C2 exon
GCAAGCCGGGCAGGGTCAAAGCCGGCACTACCGAGCTGCAGTCTGCACCGAGTTGAAGCAGCCCCTGACCATTCAAGAGGTGGCTCCTCGCCCTATCGGGCCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177_MULTIEX1-3/9=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF082407=ADH_N=PU(1.8=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]