RnoEX0092920 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75105615-75112028:+
Coord C1 exon
chr13:75105615-75105644
Coord A exon
chr13:75108891-75109029
Coord C2 exon
chr13:75111920-75112028
Length
139 bp
Sequences
Splice sites
3' ss Seq
TACTATTTTTTCTTTTTCAGATT
3' ss Score
12.22
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCGAGCACAGAGACTGGAGAACTAATGGAG
Seq A exon
ATTTTTTTTTTTATAAATGTTAAATGCAGTATTGAAAGATTTCCTTCTTTACACTCCTTGATCTTCATATTCTCTGAGAATGGCAGAATATTGTGAAAGCAATAATAGCACATTTTTCTGCGGCCAGAGAGGCATCTTG
Seq C2 exon
GCAAGCCGGGCAGGGTCAAAGCCGGCACTACCGAGCTGCAGTCTGCACCGAGTTGAAGCAGCCCCTGACCATTCAAGAGGTGGCTCCTCGCCCTATCGGGCCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177_MULTIEX1-2/9=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(1.8=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCACAGAGACTGGAGAA
R:
GCCACCTCTTGAATGGTCAGG
Band lengths:
114-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]