BtaINT0008991 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHG5]
Coordinates
chr23:4165177-4167638:+
Coord C1 exon
chr23:4165177-4165248
Coord A exon
chr23:4165249-4167602
Coord C2 exon
chr23:4167603-4167638
Length
2354 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
ATAAAACTGCCTTTTTGCAGGGG
3' ss Score
7.38
Exon sequences
Seq C1 exon
GGAGAGCCAGGAGCGGTGGGTCCCCCAGGAGAACCAGGATACCTGGGTTTACCTGGAATTCAAGGGAAAAAG
Seq A exon
GTATGATTTTTAGGATACATAATTCAGTGTTAATCAGCTGTGAACATGTAGGTTTTTCTTTTGGGCAAGTAGCATAGGAGGGCCAATGATACATTCAGCAGTGAGATGACCTACGTACTTGGCGCACACGTAATGTGCTCAACCCCATGCCAAGAGCTGTGCCCTCTTTTGTGTCCCTGCATGGGTACTGTCTCCTGCGTGAGGACCTTGGAAAAGTTAGATCAGAAAACATACAGTTAAGTAATATCCTGTAAATTCATATTGTTCAGTAGTCAACCCAGGCGAGTCAAGAATTTTTTAGGGAAAGTGTGACCGAGTCCAAAGCTCGCTCTGCTCTCCACTCGACAAGTCAGTGAATCCGAGAGACGAGGTTTGAGGCAAGGAAGAGACTTTAATCGGGGAGCCAGCTGACCAGGAAGATGCAGGCTAGTGCCCCAAAAGAACCTTCTTGTCAGGGCCTGGTTGCTGGGTTCTTTTATGGATCAGAGATCGGGGAGGTGAGGAAACAAAGGAAAAAGACTATTCAGTCCTTGCAAGTTTCCTATAGAATGGCAAGGCTCAGGTGGGGGATGTGTTAGTATCACTTCCTGACAGTCCTTCACAGGTGGCTCAGGTTCCCTCCCTCCGGCAGGCCATTGTGTATGCTAACAATAACAAAAAAGGGCTCAACTCACAGAAGCAGATGCAGTGTAAATTTAAAACTAACCCTTCCAGGTTACCAAATATTCAACTCGAGCCACTCTTAACCAAAGTATGAATATCTTTCCCAAACTGAAGCAAAAGTCTGAAATGATAAAAATTACAACCAGAATGCTTGACCATGATATTCTTTTCTCTGAAATAATTATATAACATAATAGTTCATCTAAAGTTAATTTGAGTTTAAAATGTAAGGCTTATATATTCACATAAAATATTTTGGTGAGATAAGATAGCATTCCCTTGGGTTCTCTCTCTATCCCGTTAAATAAAAAAGCTCTGAGTTGTATCTGTATAAATATCATTGTCGGCTTGAAGGCTTTGAGCAAGAACTTAACTGGCTATCTGTCAGAGAAGTCCACACCCCTGAGTCAGTATCTAAACATCCAGGTTAAAAGCGACTGTACCAGTTTTGTTCCGTAAAGGGTACAAATTCTATGTCTCCATCTTTGTATCCCTTGCTGTTTCAAGTTTTGTATCATTTCATTTTTTCTATCCCTCATGTGTTATCTGTTCGGGCCCTAGGTTATTGTCCCCAGAGTGATCTTTTTTGCTCTGATGAGTGGCAGGCAGCACTTGCTGACACAAGGATGGTCCACACAGCAGTGATTAAGTGTTGGACTCTTAGTGGCTAGTATTTATTTAATACTATTGACTATAGTATTTACTTACTACTGCTACTGCTGCTGCTGCTAAGTCAGTTGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCTCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTATCCGACTCCTAGTGACCCCATGGACTGCAGCCTACCAGGCTTCTCTGTCCCTGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGATTTACTTACTAAATCTATGTGAATATATGTTTGGATTTAGAGAATTTCCTTGTTCAGAAACTTGCCAGTTAAAAGAAAACCTGTGTTTTATTTGCTGTAAGCACAAAACCCTATGTTTGGATAGCATGGCCCAAGTTCAACTTTCGGCAAATGCTTACCTTTCCTGATCTGTGTGTTAATTATAAAAGCAAAGACATTGAACTAGTTGGTTTCAGACATCTCTCCTGGCTGAGAAACTCCAGGAAACAAAAATATGGTATATGACTTTACCCCAAAAGTTAATTTTTGAAGCATATATTTTCTAAAATACAATTTCAGCATTGTTTCATTGTTTCTTATAAATCTGTGGCTACTGTTGGCTGAATAGTAAGAAGACTTTTCAGTTTGATTTCATAAAACAAGTTTGTCTTCTCTTTGTTTAACCTCAGATTGTCATCAATATGGAAAAGTTTTCTTCTTCCTTATAACAAAGAAATTGTAGTAAACTTTCTTTTGAATATAAGAGCACAAGAAAGTATTCATTTAGAACATCACTTTGACATAATGTGGTTTTACTCTCTTCCCAAATATTATGTTAGCTTCTGTATATAAGGCACTTGTGGAATTTGCATGAGACCGTGTATTTTTCTTTGCTGAAGAAAAACATGTTTATTTGAAAGGTTACAGAATATATTATATTATGCTACATATAAAACTGCCTTTTTGCAG
Seq C2 exon
GGGGACAAAGGAAATCAAGGTGAAAGGGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046193:ENSBTAT00000036339:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=NA C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]