BtaINT0008994 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHG5]
Coordinates
chr23:4174807-4175577:+
Coord C1 exon
chr23:4174807-4174839
Coord A exon
chr23:4174840-4175432
Coord C2 exon
chr23:4175433-4175577
Length
593 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
GATTTCTCTTGTTTTTAGATGGG
3' ss Score
-12
Exon sequences
Seq C1 exon
GGAATTCAAGGCCATCACGGTGCAAAAGGAGAG
Seq A exon
GTATGTTTCTTCTTGTATTATGCTGTCCAGTCCTCACGGCTTAATTTTCAGTACTGTATAAATAAATCTAGCTGTTGACATTCCAAACAGAAAATATCTTTCATGTTCTTCAATAGTTCCTAAATAGAGATTTTCAGAATTTGCAGGTTCACTGAATTAGGTATGAAATGGTACGCATTTGTCAATAGTATTGATTCCTATTCTAAATTAGGAACTGTTTTTCTGCATATTTTCCAATGAGGACTATTATGCATCTCTATGCCTACCGCTAGAATTTAAACTCTGTGGGAACAAGACTGTCGCGGTCACTGATGTATCTCTGGTACTATGCATATTGCCTAATCAATATATGTACTAAGTAACTATTGTTTGTAGGGTTGGATGGGTGGTTGATTGGATGGATAAATTGCTGTTTAATATGGTATGAAATTTCCCTCCTGATCAATTATGGTGTTTCCCAGCAGTTACCTGTATAGTTTAGATATATGTTTGTATTTATTCATATCTGTGTTCTTGAGGACATATTTTATGGTGCAATTATACCTCCTGAAATATTTAAATAGAACTTCTGACGATTTCTCTTGTTTTTAGAT
Seq C2 exon
GGGTGAAAAGGGAGAGCCTGGTGCCCGAGGTGCCACTGGAGCCAAAGGAGAGTCTGGGGTGGATGGTCAGATGGGGCCCCCGGGCCCCCAGGGGCCCCCTGGGCAACCAGGTGATCCGGGCCCCCCAGGAATGGATGGGAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046193:ENSBTAT00000036339:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(5.2=25.0)
A:
NA
C2:
PF0139113=Collagen=FE(82.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]